irx6a (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000013614 T216527_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.808 0.860
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.808 0.860
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.808 0.860
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.808 0.860
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.808 0.860
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.808 0.860
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.800 0.825
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.800 0.825
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.800 0.825
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.800 0.825
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.800 0.825
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.800 0.825
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.789 0.877
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.777 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016613 Homeodomain 145 204

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

379 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
10921_YIL056W Saccharomyces mikatae 10921_YIL056W I
11035_YIL056W Saccharomyces paradoxus 11035_YIL056W I
11559_YIL056W Saccharomyces bayanus 11559_YIL056W I
6292_YER064C Saccharomyces paradoxus 6292_YER064C I
6651_YER064C Saccharomyces mikatae 6651_YER064C I
7027_YER064C Saccharomyces bayanus 7027_YER064C I
AACERI_AaceriADL067C Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL067C I
AGOS_ADL067C Ashbya gossypii AGOS_ADL067C I
Ecym_4329 Eremothecium cymbalariae Ecym_4329 I
KAFR_0I01770 Kazachstania africana KAFR_0I01770 I
KAFR_0L00930 Kazachstania africana KAFR_0L00930 I
KLLA0_C08151g Kluyveromyces lactis KLLA0_C08151g I
KLTH0A04444g Kluyveromyces thermotolerans KLTH0A04444g I
KLTH0A04444g Lachancea thermotolerans KLTH0A04444g I
KNAG_0L01530 Kazachstania naganishii KNAG_0L01530 I
Kpol_1066p52 Vanderwaltozyma polyspora Kpol_1066p52 I
Kwal_5842 Kluyveromyces waltii Kwal_5842 I
NCAS_0A13540 Naumovozyma castellii NCAS_0A13540 I
NCAS_0E03320 Naumovozyma castellii NCAS_0E03320 I
NDAI_0A02490 Naumovozyma dairenensis NDAI_0A02490 I
NDAI_0E04810 Naumovozyma dairenensis NDAI_0E04810 I
SAKL0F08734g Lachancea kluyveri SAKL0F08734g I
Scas_Contig701.7 Saccharomyces castellii Scas_Contig701.7 I
Scas_Contig704.29 Saccharomyces castellii Scas_Contig704.29 I
SKUD_176205 Saccharomyces kudriavzevii SKUD_176205 I
SU7_1620 Saccharomyces arboricola SU7_1620 I
TBLA_0C04650 Tetrapisispora blattae TBLA_0C04650 I
TDEL_0H01980 Torulaspora delbrueckii TDEL_0H01980 I
TPHA_0J00900 Tetrapisispora phaffii TPHA_0J00900 I
VHR1 Saccharomyces cerevisiae YIL056W D
VHR2 Saccharomyces cerevisiae YER064C D
ZBAI_00133 Zygosaccharomyces bailii ZBAI_00133 I
ZBAI_05302 Zygosaccharomyces bailii ZBAI_05302 I
ZYRO0C08250g Zygosaccharomyces rouxii ZYRO0C08250g I