ENSXMAG00000000423 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000000423 T217095_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.722 0.435
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.722 0.435
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.722 0.435
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.722 0.435
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.722 0.435
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.722 0.435
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.722 0.435
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.722 0.435
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.722 0.435
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.685 0.522
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.685 0.522
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.685 0.522
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000000416 Homeodomain 168 213

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

1235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27496.m000094 Ricinus communis 27496.m000094 N 0.000
28976.m000158 Ricinus communis 28976.m000158 N 0.000
29700.m000761 Ricinus communis 29700.m000761 I 0.000
30068.m002588 Ricinus communis 30068.m002588 N 0.000
30170.m013673 Ricinus communis 30170.m013673 N 0.000
30190.m011066 Ricinus communis 30190.m011066 I 0.000
AMTR_s00018p00250840 Amborella trichopoda AMTR_s00018p00250840 N 0.000
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I 0.000
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I 0.000
Aquca_076_00011 Aquilegia coerulea Aquca_076_00011 N 0.000
Aquca_122_00004 Aquilegia coerulea Aquca_122_00004 N 0.000
AtGRF1 Arabidopsis lyrata fgenesh2_kg.4__207__AT2G22840.1 N 0.000
AtGRF2 Arabidopsis lyrata Al_scaffold_0007_269 N 0.000
AtGRF7 Vitis vinifera VIT_16s0098g01080 N 0.000
AtGRF8 Vitis vinifera VIT_02s0025g02680 N 0.000
BGIOSGA013499 Oryza indica BGIOSGA013499 N 0.000
BGIOSGA022056 Oryza indica BGIOSGA022056 I 0.000
BGIOSGA035433 Oryza indica BGIOSGA035433 N 0.000
BGIOSGA037400 Oryza indica BGIOSGA037400 N 0.000
Bo1g037590 Brassica oleracea Bo1g037590 N 0.000
Bo2g044580 Brassica oleracea Bo2g044580 N 0.000
Bo3g042310 Brassica oleracea Bo3g042310 N 0.000
Bo4g122960 Brassica oleracea Bo4g122960 N 0.000
Bo7g109350 Brassica oleracea Bo7g109350 N 0.000
Bo7g118730 Brassica oleracea Bo7g118730 N 0.000
Bostr.19427s0054 Boechera stricta Bostr.19427s0054 N 0.000
Bostr.26833s0909 Boechera stricta Bostr.26833s0909 N 0.000
Bostr.7867s0220 Boechera stricta Bostr.7867s0220 N 0.000
Bostr.7867s1635 Boechera stricta Bostr.7867s1635 N 0.000
Bra000575 Brassica rapa Bra000575 N 0.000
Bra005268 Brassica rapa Bra005268 N 0.000
Bra013767 Brassica rapa Bra013767 N 0.000
Bra017851 Brassica rapa Bra017851 N 0.000
Bra019244 Brassica rapa Bra019244 N 0.000
Bra022667 Brassica rapa Bra022667 N 0.000
BRADI1G09900 Brachypodium distachyon BRADI1G09900 N 0.000
BRADI1G50597 Brachypodium distachyon BRADI1G50597 I 0.000
BRADI4G16450 Brachypodium distachyon BRADI4G16450 N 0.000
Cagra.1226s0080 Capsella grandiflora Cagra.1226s0080 N 0.000
Cagra.2460s0032 Capsella grandiflora Cagra.2460s0032 N 0.000
Cagra.4290s0006 Capsella grandiflora Cagra.4290s0006 N 0.000
Cagra.9757s0010 Capsella grandiflora Cagra.9757s0010 N 0.000
Carubv10004544m.g Capsella rubella Carubv10004544m.g N 0.000
Carubv10007298m.g Capsella rubella Carubv10007298m.g N 0.000
Carubv10022975m.g Capsella rubella Carubv10022975m.g N 0.000
Carubv10026610m.g Capsella rubella Carubv10026610m.g N 0.000
cassava17264.m1 Manihot esculenta cassava17264.m1 N 0.000
cassava2869.m1 Manihot esculenta cassava2869.m1 N 0.000
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.000
cassava32870.m1 Manihot esculenta cassava32870.m1 N 0.000
cassava35131.m1 Manihot esculenta cassava35131.m1 N 0.000
cassava37892.valid.m1 Manihot esculenta cassava37892.valid.m1 N 0.000
cassava7966.valid.m1 Manihot esculenta cassava7966.valid.m1 N 0.000
Ca_00772 Cicer arietinum Ca_00772 N 0.000
Ca_04035 Cicer arietinum Ca_04035 N 0.000
Ciclev10011856m.g Citrus clementina Ciclev10011856m.g N 0.000
Ciclev10019529m.g Citrus clementina Ciclev10019529m.g N 0.000
Ciclev10019828m.g Citrus clementina Ciclev10019828m.g N 0.000
Ciclev10022033m.g Citrus clementina Ciclev10022033m.g I 0.000
Cla017990 Citrullus lanatus Cla017990 N 0.000
Cucsa.378420 Cucumis sativus Cucsa.378420 N 0.000
Eucgr.A01418 Eucalyptus grandis Eucgr.A01418 N 0.000
Eucgr.A01534 Eucalyptus grandis Eucgr.A01534 N 0.000
Eucgr.D01674 Eucalyptus grandis Eucgr.D01674 N 0.000
evm.TU.supercontig_3.145 Carica papaya evm.TU.supercontig_3.145 N 0.000
evm.TU.supercontig_5.63 Carica papaya evm.TU.supercontig_5.63 N 0.000
F775_19681 Aegilops tauschii F775_19681 I 0.000
F775_27966 Aegilops tauschii F775_27966 N 0.000
gene12741-v1.0-hybrid Fragaria vesca gene12741-v1.0-hybrid N 0.000
GLYMA03G35010 Glycine max GLYMA03G35010 N 0.000
GLYMA04G40880 Glycine max GLYMA04G40880 N 0.000
GLYMA06G13960 Glycine max GLYMA06G13960 N 0.000
GLYMA19G37740 Glycine max GLYMA19G37740 N 0.000
Gorai.008G259500 Gossypium raimondii Gorai.008G259500 N 0.000
Gorai.008G265600 Gossypium raimondii Gorai.008G265600 N 0.000
Gorai.009G406500 Gossypium raimondii Gorai.009G406500 N 0.000
GRF1 Arabidopsis thaliana AT2G22840 N 0.000
GRF2 Arabidopsis thaliana AT4G37740 N 0.000
GRF8 Arabidopsis thaliana AT4G24150 N 0.000
GRMZM2G045977 Zea mays GRMZM2G045977 N 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM2G098594 Zea mays GRMZM2G098594 I 0.000
GRMZM2G124566 Zea mays GRMZM2G124566 N 0.000
GRMZM2G178261 Zea mays GRMZM2G178261 N 0.000
GRMZM2G443903 Zea mays GRMZM2G443903 N 0.000
GRMZM5G853392 Zea mays GRMZM5G853392 N 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I 0.000
GSMUA_Achr3G15140_001 Musa acuminata GSMUA_Achr3G15140_001 N 0.000
GSMUA_Achr3G22790_001 Musa acuminata GSMUA_Achr3G22790_001 N 0.000
GSMUA_Achr4G32310_001 Musa acuminata GSMUA_Achr4G32310_001 N 0.000
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I 0.000
GSMUA_Achr7G27480_001 Musa acuminata GSMUA_Achr7G27480_001 N 0.000
GSMUA_Achr8G04970_001 Musa acuminata GSMUA_Achr8G04970_001 N 0.000
GSMUA_Achr8G07650_001 Musa acuminata GSMUA_Achr8G07650_001 N 0.000
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N 0.000
GSMUA_Achr8G26530_001 Musa acuminata GSMUA_Achr8G26530_001 N 0.000
GSMUA_AchrUn_randomG15490_001 Musa acuminata GSMUA_AchrUn_randomG15490_001 N 0.000
LPERR03G27480 Leersia perrieri LPERR03G27480 N 0.000
LPERR06G01000 Leersia perrieri LPERR06G01000 I 0.000
LPERR11G13310 Leersia perrieri LPERR11G13310 N 0.000
LPERR12G10130 Leersia perrieri LPERR12G10130 N 0.000
Lus10008268.g Linum usitatissimum Lus10008268.g N 0.000
Lus10011558.g Linum usitatissimum Lus10011558.g N 0.000
Lus10014380.g Linum usitatissimum Lus10014380.g N 0.000
Lus10019274.g Linum usitatissimum Lus10019274.g N 0.000
Lus10033236.g Linum usitatissimum Lus10033236.g N 0.000
MDP0000261112 Malus domestica MDP0000261112 N 0.000
MDP0000322576 Malus domestica MDP0000322576 N 0.000
MDP0000808163 Malus domestica MDP0000808163 N 0.000
MDP0000814056 Malus domestica MDP0000814056 N 0.000
MDP0000842815 Malus domestica MDP0000842815 N 0.000
mgf003183m Mimulus guttatus mgf003183m N 0.000
mgf011630m Mimulus guttatus mgf011630m N 0.000
mgf013307m Mimulus guttatus mgf013307m N 0.000
MLOC_67201 Hordeum vulgare MLOC_67201 N 0.000
OB03G39940 Oryza brachyantha OB03G39940 I 0.000
OB06G11200 Oryza brachyantha OB06G11200 I 0.000
OB11G22890 Oryza brachyantha OB11G22890 N 0.000
OB12G20240 Oryza brachyantha OB12G20240 N 0.000
OBART03G32870 Oryza barthii OBART03G32870 N 0.000
OBART06G01070 Oryza barthii OBART06G01070 I 0.000
OBART11G16830 Oryza barthii OBART11G16830 N 0.000
OBART12G12240 Oryza barthii OBART12G12240 N 0.000
OGLUM03G32510 Oryza glumaepatula OGLUM03G32510 N 0.000
OGLUM06G01060 Oryza glumaepatula OGLUM06G01060 I 0.000
OGLUM11G16300 Oryza glumaepatula OGLUM11G16300 N 0.000
OGLUM12G13820 Oryza glumaepatula OGLUM12G13820 N 0.000
OLONG_005678 Oryza longistaminata OLONG_005678 N 0.000
OLONG_020244 Oryza longistaminata OLONG_020244 N 0.000
OMERI03G29560 Oryza meridionalis OMERI03G29560 N 0.000
OMERI04G16620 Oryza meridionalis OMERI04G16620 N 0.000
OMERI06G01060 Oryza meridionalis OMERI06G01060 I 0.000
OMERI12G08740 Oryza meridionalis OMERI12G08740 N 0.000
ONIVA03G34380 Oryza nivara ONIVA03G34380 N 0.000
ONIVA06G01450 Oryza nivara ONIVA06G01450 I 0.000
ONIVA11G16660 Oryza nivara ONIVA11G16660 N 0.000
ONIVA12G12410 Oryza nivara ONIVA12G12410 N 0.000
OPUNC03G30000 Oryza punctata OPUNC03G30000 N 0.000
OPUNC06G01050 Oryza punctata OPUNC06G01050 I 0.000
OPUNC11G13830 Oryza punctata OPUNC11G13830 N 0.000
OPUNC12G10860 Oryza punctata OPUNC12G10860 N 0.000
orange1.1g009918m.g Citrus sinensis orange1.1g009918m.g N 0.000
orange1.1g010979m.g Citrus sinensis orange1.1g010979m.g N 0.000
orange1.1g028751m.g Citrus sinensis orange1.1g028751m.g I 0.000
ORGLA03G0298100 Oryza glaberrima ORGLA03G0298100 N 0.000
ORGLA06G0010200 Oryza glaberrima ORGLA06G0010200 I 0.000
ORGLA11G0141300 Oryza glaberrima ORGLA11G0141300 N 0.000
ORUFI03G34250 Oryza rufipogon ORUFI03G34250 N 0.000
ORUFI06G01080 Oryza rufipogon ORUFI06G01080 I 0.000
ORUFI11G17860 Oryza rufipogon ORUFI11G17860 N 0.000
ORUFI12G13380 Oryza rufipogon ORUFI12G13380 N 0.000
OS03G0729500 Oryza sativa OS03G0729500 N 0.000
OS12G0484900 Oryza sativa OS12G0484900 N 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
Pavir.Da02366 Panicum virgatum Pavir.Da02366 I 0.000
Pavir.Db02421 Panicum virgatum Pavir.Db02421 I 0.000
Pavir.Hb00712 Panicum virgatum Pavir.Hb00712 N 0.000
Pavir.J06517 Panicum virgatum Pavir.J06517 N 0.000
Pavir.J11763 Panicum virgatum Pavir.J11763 N 0.000
Pavir.J29705 Panicum virgatum Pavir.J29705 N 0.000
PDK_20s1348362g001 Phoenix dactylifera PDK_20s1348362g001 N 0.000
PGSC0003DMG400003220 Solanum tuberosum PGSC0003DMG400003220 N 0.000
PGSC0003DMG400012233 Solanum tuberosum PGSC0003DMG400012233 N 0.000
PGSC0003DMG400021403 Solanum tuberosum PGSC0003DMG400021403 N 0.000
PGSC0003DMG400028259 Solanum tuberosum PGSC0003DMG400028259 N 0.000
PK14408.1 Cannabis sativa PK14408.1 N 0.000
PK16254.1 Cannabis sativa PK16254.1 N 0.000
PK17885.1 Cannabis sativa PK17885.1 N 0.000
PK26554.1 Cannabis sativa PK26554.1 N 0.000
Pm019687 Prunus mume Pm019687 N 0.000
Pm024257 Prunus mume Pm024257 N 0.000
Pm026217 Prunus mume Pm026217 N 0.000
POPTR_0001s08310 Populus trichocarpa POPTR_0001s08310 N 0.000
POPTR_0001s11480 Populus trichocarpa POPTR_0001s11480 N 0.000
POPTR_0012s02950 Populus trichocarpa POPTR_0012s02950 N 0.000
POPTR_0015s00860 Populus trichocarpa POPTR_0015s00860 N 0.000
PRUPE_ppa006912mg Prunus persica PRUPE_ppa006912mg N 0.000
PRUPE_ppa019752mg Prunus persica PRUPE_ppa019752mg N 0.000
PRUPE_ppa024293mg Prunus persica PRUPE_ppa024293mg N 0.000
SapurV1A.0059s0450 Salix purpurea SapurV1A.0059s0450 N 0.000
SapurV1A.0094s0370 Salix purpurea SapurV1A.0094s0370 N 0.000
SapurV1A.0326s0130 Salix purpurea SapurV1A.0326s0130 I 0.000
SapurV1A.0755s0030 Salix purpurea SapurV1A.0755s0030 N 0.000
SapurV1A.2815s0020 Salix purpurea SapurV1A.2815s0020 N 0.000
Sb01g009330 Sorghum bicolor Sb01g009330 N 0.000
Sb04g031890 Sorghum bicolor Sb04g031890 N 0.000
Sb10g001350 Sorghum bicolor Sb10g001350 I 0.000
Si008818m.g Setaria italica Si008818m.g I 0.000
Si018252m.g Setaria italica Si018252m.g N 0.000
Si034822m.g Setaria italica Si034822m.g N 0.000
Solyc02g092070.2 Solanum lycopersicum Solyc02g092070.2 N 0.000
Solyc03g082430.1 Solanum lycopersicum Solyc03g082430.1 N 0.000
Solyc08g083230.1 Solanum lycopersicum Solyc08g083230.1 N 0.000
Solyc10g083510.1 Solanum lycopersicum Solyc10g083510.1 N 0.000
TCM_015497 Theobroma cacao TCM_015497 N 0.000
TCM_015625 Theobroma cacao TCM_015625 N 0.000
TCM_022490 Theobroma cacao TCM_022490 N 0.000
Thhalv10000124m.g Eutrema salsugineum Thhalv10000124m.g N 0.000
Thhalv10013862m.g Eutrema salsugineum Thhalv10013862m.g N 0.000
Thhalv10024915m.g Eutrema salsugineum Thhalv10024915m.g N 0.000
Thhalv10025371m.g Eutrema salsugineum Thhalv10025371m.g N 0.000
Traes_4AL_4954CD38D Triticum aestivum Traes_4AL_4954CD38D N 0.000
Traes_4BS_1B1F669A3 Triticum aestivum Traes_4BS_1B1F669A3 N 0.000
Traes_4DS_0FB3F3EE9 Triticum aestivum Traes_4DS_0FB3F3EE9 N 0.000
Traes_4DS_0FB3F3EE91 Triticum aestivum Traes_4DS_0FB3F3EE91 N 0.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.000
TRIUR3_01357 Triticum urartu TRIUR3_01357 I 0.000
VIT_02s0025g04910 Vitis vinifera VIT_02s0025g04910 I 0.000
VIT_08s0007g03760 Vitis vinifera VIT_08s0007g03760 N 0.000