ENSXMAG00000005284 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000005284 T217168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000005293 Homeodomain 143 201

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003096 Ricinus communis 29801.m003096 I
29814.m000736 Ricinus communis 29814.m000736 I
29970.m000987 Ricinus communis 29970.m000987 I
30170.m013698 Ricinus communis 30170.m013698 I
30170.m013927 Ricinus communis 30170.m013927 I
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I
AtMYB70 Arabidopsis thaliana AT2G23290 D
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I
BGIOSGA000485 Oryza indica BGIOSGA000485 I
BGIOSGA018238 Oryza indica BGIOSGA018238 I
BGIOSGA018239 Oryza indica BGIOSGA018239 I
BGIOSGA030245 Oryza indica BGIOSGA030245 I
Bo1g004900 Brassica oleracea Bo1g004900 I
Bo1g082480 Brassica oleracea Bo1g082480 I
Bo2g167960 Brassica oleracea Bo2g167960 I
Bo3g153550 Brassica oleracea Bo3g153550 I
Bo4g151410 Brassica oleracea Bo4g151410 I
Bo7g063830 Brassica oleracea Bo7g063830 I
Bo7g099180 Brassica oleracea Bo7g099180 I
Bo7g118450 Brassica oleracea Bo7g118450 I
Bo8g079430 Brassica oleracea Bo8g079430 I
Bo8g090160 Brassica oleracea Bo8g090160 I
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I
Bra007186 Brassica rapa Bra007186 I
Bra010593 Brassica rapa Bra010593 I
Bra011749 Brassica rapa Bra011749 I
Bra012149 Brassica rapa Bra012149 I
Bra012910 Brassica rapa Bra012910 I
Bra017813 Brassica rapa Bra017813 I
Bra029990 Brassica rapa Bra029990 I
Bra032176 Brassica rapa Bra032176 I
Bra036048 Brassica rapa Bra036048 I
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I
Carubv10007638m.g Capsella rubella Carubv10007638m.g I
Carubv10019440m.g Capsella rubella Carubv10019440m.g I
Carubv10023414m.g Capsella rubella Carubv10023414m.g I
Carubv10023692m.g Capsella rubella Carubv10023692m.g I
Carubv10027659m.g Capsella rubella Carubv10027659m.g I
cassava16103.m1 Manihot esculenta cassava16103.m1 I
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I
cassava46434.m1 Manihot esculenta cassava46434.m1 I
cassava47374.m1 Manihot esculenta cassava47374.m1 I
cassava8939.m1 Manihot esculenta cassava8939.m1 I
Ca_01522 Cicer arietinum Ca_01522 I
Ca_02182 Cicer arietinum Ca_02182 I
Ca_12468 Cicer arietinum Ca_12468 I
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I
Cla006872 Citrullus lanatus Cla006872 I
Cla014191 Citrullus lanatus Cla014191 I
Cla020946 Citrullus lanatus Cla020946 I
Cla021015 Citrullus lanatus Cla021015 I
Cla022947 Citrullus lanatus Cla022947 I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
Cucsa.073130 Cucumis sativus Cucsa.073130 I
Cucsa.102710 Cucumis sativus Cucsa.102710 I
Cucsa.123440 Cucumis sativus Cucsa.123440 I
Cucsa.352560 Cucumis sativus Cucsa.352560 I
Cucsa.395890 Cucumis sativus Cucsa.395890 I
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I
Eucgr.J00189 Eucalyptus grandis Eucgr.J00189 I
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I
F3A4.140 Arabidopsis thaliana AT3G50060 D
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I
GLYMA01G39740 Glycine max GLYMA01G39740 I
GLYMA04G03910 Glycine max GLYMA04G03910 I
GLYMA04G04490 Glycine max GLYMA04G04490 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
GLYMA06G04010 Glycine max GLYMA06G04010 I
GLYMA11G05550 Glycine max GLYMA11G05550 I
GLYMA14G09540 Glycine max GLYMA14G09540 I
GLYMA17G35620 Glycine max GLYMA17G35620 I
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I
GRMZM2G050550 Zea mays GRMZM2G050550 I
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I
LPERR01G32110 Leersia perrieri LPERR01G32110 I
LPERR09G00910 Leersia perrieri LPERR09G00910 I
Lus10007503.g Linum usitatissimum Lus10007503.g I
Lus10010238.g Linum usitatissimum Lus10010238.g I
Lus10010260.g Linum usitatissimum Lus10010260.g I
Lus10014103.g Linum usitatissimum Lus10014103.g I
Lus10021762.g Linum usitatissimum Lus10021762.g I
Lus10028979.g Linum usitatissimum Lus10028979.g I
Lus10030336.g Linum usitatissimum Lus10030336.g I
Lus10032764.g Linum usitatissimum Lus10032764.g I
Lus10040940.g Linum usitatissimum Lus10040940.g I
MDP0000187872 Malus domestica MDP0000187872 I
MDP0000196986 Malus domestica MDP0000196986 I
MDP0000232454 Malus domestica MDP0000232454 I
MDP0000275800 Malus domestica MDP0000275800 I
MDP0000463846 Malus domestica MDP0000463846 I
MDP0000477900 Malus domestica MDP0000477900 I
MDP0000480596 Malus domestica MDP0000480596 I
MDP0000641708 Malus domestica MDP0000641708 I
MDP0000784297 Malus domestica MDP0000784297 I
MDP0000823270 Malus domestica MDP0000823270 I
MDP0000894463 Malus domestica MDP0000894463 I
mgf002573m Mimulus guttatus mgf002573m I
mgf014089m Mimulus guttatus mgf014089m I
mgf023922m Mimulus guttatus mgf023922m I
mgf025567m Mimulus guttatus mgf025567m I
MLOC_64817 Hordeum vulgare MLOC_64817 I
MTR_4g094982 Medicago truncatula MTR_4g094982 I
MTR_5g016510 Medicago truncatula MTR_5g016510 I
MYB109 Arabidopsis thaliana AT3G55730 I
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I
MYB44 Arabidopsis thaliana AT5G67300 D
MYB73 Arabidopsis thaliana AT4G37260 D
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I
OB01G46120 Oryza brachyantha OB01G46120 I
OB09G10200 Oryza brachyantha OB09G10200 I
OBART01G37390 Oryza barthii OBART01G37390 I
OBART09G00310 Oryza barthii OBART09G00310 I
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I
OLONG_001357 Oryza longistaminata OLONG_001357 I
OMERI01G34370 Oryza meridionalis OMERI01G34370 I
OMERI05G11510 Oryza meridionalis OMERI05G11510 I
OMERI08G05160 Oryza meridionalis OMERI08G05160 I
ONIVA01G42300 Oryza nivara ONIVA01G42300 I
ONIVA05G13470 Oryza nivara ONIVA05G13470 I
ONIVA09G00250 Oryza nivara ONIVA09G00250 I
OPUNC01G36300 Oryza punctata OPUNC01G36300 I
OPUNC05G11020 Oryza punctata OPUNC05G11020 I
OPUNC12G06260 Oryza punctata OPUNC12G06260 I
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I
ORGLA05G0109400 Oryza glaberrima ORGLA05G0109400 I
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I
OS01G0850400 Oryza sativa OS01G0850400 I
OS09G0106700 Oryza sativa OS09G0106700 I
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I
PK16550.1 Cannabis sativa PK16550.1 I
PK17282.1 Cannabis sativa PK17282.1 I
PK28565.1 Cannabis sativa PK28565.1 D
Pm005220 Prunus mume Pm005220 I
Pm005332 Prunus mume Pm005332 I
Pm021211 Prunus mume Pm021211 I
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I
Sb02g013010 Sorghum bicolor Sb02g013010 I
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I
Si032789m.g Setaria italica Si032789m.g I
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I
TCM_000696 Theobroma cacao TCM_000696 I
TCM_007138 Theobroma cacao TCM_007138 I
TCM_042474 Theobroma cacao TCM_042474 I
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I