AtHB23 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.1__2657__AT1G26960.1 T218449_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.875
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.875
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.757 0.696
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.744 0.768
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.744 0.768
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.744 0.768
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.744 0.768
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.731 0.750
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.731 0.750
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.731 0.750
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.731 0.750
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.725 0.696
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.725 0.696
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.725 0.696
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.725 0.696
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.686 0.589
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.686 0.589
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.685 0.571
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.685 0.571
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.680 0.554
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.680 0.554
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.649 0.768
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.649 0.768
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.633 0.786
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.633 0.786
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.611 0.625
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.611 0.625
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.611 0.625
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2657__AT1G26960.1 Homeodomain 70 125

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

814 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009653 Calypte anna Aan_R009653 I 0.000
ACEP24947 Atta cephalotes ACEP24947 I 0.000
ACYPI34905 Acyrthosiphon pisum ACYPI34905 I 0.000
Afo_R011420 Aptenodytes forsteri Afo_R011420 I 0.000
Alligator_sinensis_CCG008426.1 Alligator sinensis Alligator_sinensis_CCG008426.1 I 0.000
A_04922 Schistosoma haematobium A_04922 I 0.000
BGIBMGA012276 Bombyx mori BGIBMGA012276 I 0.000
BGLB014115 Biomphalaria glabrata BGLB014115 I 0.000
bin Drosophila melanogaster FBgn0045759 D 0.000
CAB44731 Xenopus laevis CAB44731 I 0.000
CapteG154409 Capitella teleta CapteG154409 I 0.000
CapteG50240 Capitella teleta CapteG50240 I 0.000
Cflo_10223--XP_001121825.1_APIME Camponotus floridanus Cflo_10223--XP_001121825.1_APIME I 0.000
CGI_10008560 Crassostrea gigas CGI_10008560 I 0.000
CLEC000012 Cimex lectularius CLEC000012 I 0.000
Cmyd_10016714 Chelonia mydas Cmyd_10016714 I 0.000
csin100553 Clonorchis sinensis csin100553 I 0.000
D917_06251 Trichinella nativa D917_06251 I 0.000
D918_05377 Trichuris suis D918_05377 I 0.000
DAPPUDRAFT_17917 Daphnia pulex DAPPUDRAFT_17917 I 0.000
ECANG7_02113 Echinococcus canadensis ECANG7_02113 I 0.000
EFV52873 Trichinella spiralis EFV52873 I 0.000
EmuJ_000693700 Echinococcus multilocularis EmuJ_000693700 I 0.000
ENSACAG00000017732 Anolis carolinensis ENSACAG00000017732 I 0.000
ENSAMEG00000007498 Ailuropoda melanoleuca ENSAMEG00000007498 I 0.000
ENSAMEG00000018266 Ailuropoda melanoleuca ENSAMEG00000018266 I 0.000
ENSAMXG00000003465 Astyanax mexicanus ENSAMXG00000003465 I 0.000
ENSAMXG00000006173 Astyanax mexicanus ENSAMXG00000006173 I 0.000
ENSAMXG00000014746 Astyanax mexicanus ENSAMXG00000014746 I 0.000
ENSAPLG00000010851 Anas platyrhynchos ENSAPLG00000010851 I 0.000
ENSBTAP00000000009-D1 Bos grunniens ENSBTAP00000000009-D1 I 0.000
ENSCSAG00000003141 Chlorocebus sabaeus ENSCSAG00000003141 I 0.000
ENSCSAG00000007180 Chlorocebus sabaeus ENSCSAG00000007180 I 0.000
ENSCSAVG00000008978 Ciona savignyi ENSCSAVG00000008978 I 0.000
ENSFALG00000006654 Ficedula albicollis ENSFALG00000006654 I 0.000
ENSGACG00000005011 Gasterosteus aculeatus ENSGACG00000005011 I 0.000
ENSGALG00000005728 Gallus gallus ENSGALG00000005728 I 0.000
ENSGMOG00000003941 Gadus morhua ENSGMOG00000003941 I 0.000
ENSGMOG00000013623 Gadus morhua ENSGMOG00000013623 I 0.000
ENSGMOG00000017082 Gadus morhua ENSGMOG00000017082 I 0.000
ENSLACG00000001797 Latimeria chalumnae ENSLACG00000001797 I 0.000
ENSLACG00000014221 Latimeria chalumnae ENSLACG00000014221 I 0.000
ENSLOCG00000001042 Lepisosteus oculatus ENSLOCG00000001042 I 0.000
ENSLOCG00000012987 Lepisosteus oculatus ENSLOCG00000012987 I 0.000
ENSMEUG00000008968 Macropus eugenii ENSMEUG00000008968 I 0.000
ENSMICG00000000836 Microcebus murinus ENSMICG00000000836 I 0.000
ENSMICG00000010236 Microcebus murinus ENSMICG00000010236 I 0.000
ENSMMUG00000019503 Macaca mulatta ENSMMUG00000019503 I 0.000
ENSMODG00000025014 Monodelphis domestica ENSMODG00000025014 I 0.000
ENSMPUG00000000392 Mustela putorius furo ENSMPUG00000000392 I 0.000
ENSONIG00000005638 Oreochromis niloticus ENSONIG00000005638 I 0.000
ENSONIG00000006406 Oreochromis niloticus ENSONIG00000006406 I 0.000
ENSONIG00000009636 Oreochromis niloticus ENSONIG00000009636 I 0.000
ENSP00000262426 Macaca fascicularis ENSP00000262426 I 0.000
ENSPANG00000006104 Papio anubis ENSPANG00000006104 I 0.000
ENSPFOG00000000493 Poecilia formosa ENSPFOG00000000493 I 0.000
ENSPFOG00000015489 Poecilia formosa ENSPFOG00000015489 I 0.000
ENSPFOG00000017654 Poecilia formosa ENSPFOG00000017654 I 0.000
ENSPMAG00000004470 Petromyzon marinus ENSPMAG00000004470 I 0.000
ENSPPYG00000007623 Pongo abelii ENSPPYG00000007623 I 0.000
ENSPSIG00000004712 Pelodiscus sinensis ENSPSIG00000004712 I 0.000
ENSSHAG00000012720 Sarcophilus harrisii ENSSHAG00000012720 I 0.000
ENSSHAG00000012906 Sarcophilus harrisii ENSSHAG00000012906 I 0.000
ENSSSCG00000000992 Sus scrofa ENSSSCG00000000992 I 0.000
ENSSTOG00000020735 Ictidomys tridecemlineatus ENSSTOG00000020735 I 0.000
ENSTNIG00000008224 Tetraodon nigroviridis ENSTNIG00000008224 I 0.000
ENSTRUG00000004486 Takifugu rubripes ENSTRUG00000004486 I 0.000
ENSTRUG00000007367 Takifugu rubripes ENSTRUG00000007367 I 0.000
ENSTSYG00000010094 Tarsius syrichta ENSTSYG00000010094 I 0.000
ENSXMAG00000003079 Xiphophorus maculatus ENSXMAG00000003079 I 0.000
ENSXMAG00000006203 Xiphophorus maculatus ENSXMAG00000006203 I 0.000
ENSXMAG00000017028 Xiphophorus maculatus ENSXMAG00000017028 I 0.000
fgenesh2_pg.scaffold_6000134 Branchiostoma floridae fgenesh2_pg.scaffold_6000134 I 0.000
foxf Ciona intestinalis ENSCING00000009387 I 0.000
FOXF1 Bos taurus ENSBTAG00000000009 I 0.000
FOXF1 Canis familiaris ENSCAFG00000019918 I 0.000
FOXF1 Callithrix jacchus ENSCJAG00000017152 I 0.000
FOXF1 Cavia porcellus ENSCPOG00000000954 I 0.000
foxf1 Danio rerio ENSDARG00000015399 I 0.000
FOXF1 Equus caballus ENSECAG00000020094 I 0.000
FOXF1 Erinaceus europaeus ENSEEUG00000002843 I 0.000
FOXF1 Felis catus ENSFCAG00000030557 I 0.000
FOXF1 Homo sapiens ENSG00000103241 D 0.000
foxf1 Gasterosteus aculeatus ENSGACG00000015956 I 0.000
FOXF1 Loxodonta africana ENSLAFG00000002036 I 0.000
Foxf1 Mus musculus ENSMUSG00000042812 I 0.000
FOXF1 Ornithorhynchus anatinus ENSOANG00000007633 I 0.000
FOXF1 Oryctolagus cuniculus ENSOCUG00000001701 I 0.000
FOXF1 Otolemur garnettii ENSOGAG00000011910 I 0.000
foxf1 Oryzias latipes ENSORLG00000009476 I 0.000
FOXF1 Pan troglodytes ENSPTRG00000008439 I 0.000
FOXF1 Pteropus vampyrus ENSPVAG00000007544 I 0.000
Foxf1 Rattus norvegicus ENSRNOG00000049906 I 0.000
FOXF1 Taeniopygia guttata ENSTGUG00000004150 I 0.000
foxf1 Tetraodon nigroviridis ENSTNIG00000009284 I 0.000
foxf1 Takifugu rubripes ENSTRUG00000018211 I 0.000
FOXF1 Tursiops truncatus ENSTTRG00000005881 I 0.000
foxf1 Xenopus tropicalis XB-GENE-478922 I 0.000
foxf1.L Xenopus laevis XB-GENE-865226 I 0.000
foxf1.S Xenopus laevis XB-GENE-6254084 I 0.000
FOXF2 Bos taurus ENSBTAG00000026896 I 0.000
FOXF2 Canis familiaris ENSCAFG00000009195 I 0.000
FOXF2 Callithrix jacchus ENSCJAG00000019592 I 0.000
FOXF2 Dasypus novemcinctus ENSDNOG00000031153 I 0.000
Foxf2 Dipodomys ordii ENSDORG00000001552 I 0.000
FOXF2 Echinops telfairi ENSETEG00000019667 I 0.000
FOXF2 Felis catus ENSFCAG00000005901 I 0.000
FOXF2 Homo sapiens ENSG00000137273 D 0.000
FOXF2 Gorilla gorilla ENSGGOG00000013479 I 0.000
FOXF2 Loxodonta africana ENSLAFG00000002074 I 0.000
FOXF2 Myotis lucifugus ENSMLUG00000030088 I 0.000
FOXF2 Monodelphis domestica ENSMODG00000008307 I 0.000
Foxf2 Mus musculus ENSMUSG00000038402 I 0.000
FOXF2 Ornithorhynchus anatinus ENSOANG00000015736 I 0.000
FOXF2 Oryctolagus cuniculus ENSOCUG00000013970 I 0.000
FOXF2 Otolemur garnettii ENSOGAG00000005954 I 0.000
FOXF2 Ochotona princeps ENSOPRG00000010077 I 0.000
foxf2 Oryzias latipes ENSORLG00000012595 I 0.000
FOXF2 Pan troglodytes ENSPTRG00000017662 I 0.000
foxf2 Xenopus tropicalis XB-GENE-484646 I 0.000
foxf2.L Xenopus laevis XB-GENE-6492365 I 0.000
foxf2a Danio rerio ENSDARG00000017195 I 0.000
foxf2a Gasterosteus aculeatus ENSGACG00000016466 I 0.000
foxf2a Oryzias latipes ENSORLG00000017250 I 0.000
foxf2a Tetraodon nigroviridis ENSTNIG00000008527 I 0.000
foxf2a Takifugu rubripes ENSTRUG00000011537 I 0.000
foxf2b Danio rerio ENSDARG00000070389 I 0.000
GD13983 Drosophila simulans FBgn0185679 I 0.000
GE21586 Drosophila yakuba FBgn0238841 I 0.000
Gfo_R000500 Geospiza fortis Gfo_R000500 I 0.000
Gfo_R003355 Geospiza fortis Gfo_R003355 I 0.000
GG14397 Drosophila erecta FBgn0106656 I 0.000
GI12976 Drosophila mojavensis FBgn0135733 I 0.000
GJ13121 Drosophila virilis FBgn0200348 I 0.000
GM14811 Drosophila sechellia FBgn0169732 I 0.000
HDID_0000182601 Hymenolepis diminuta HDID_0000182601 I 0.000
HMEL012080 Heliconius melpomene HMEL012080 I 0.000
HmN_000866900 Hymenolepis microstoma HmN_000866900 I 0.000
HmN_000867700 Hymenolepis microstoma HmN_000867700 I 0.000
HNAJ_0000856401 Hymenolepis nana HNAJ_0000856401 I 0.000
Hsal_11340--XP_001121825.1_APIME Harpegnathos saltator Hsal_11340--XP_001121825.1_APIME I 0.000
ISCW021480 Ixodes scapularis ISCW021480 I 0.000
L798_09839 Zootermopsis nevadensis L798_09839 I 0.000
L889_g32134 Steinernema feltiae L889_g32134 I 0.000
LCUP017775 Lucilia cuprina LCUP017775 I 0.000
LDEC015330 Leptinotarsa decemlineata LDEC015330 I 0.000
LotgiG117350 Lottia gigantea LotgiG117350 I 0.000
Myotis_brandtii_FOXF1_10035307 Myotis brandtii Myotis_brandtii_FOXF1_10035307 I 0.000
Myotis_brandtii_Foxf2_10020358 Myotis brandtii Myotis_brandtii_Foxf2_10020358 I 0.000
NV17129 Nasonia vitripennis NV17129 I 0.000
Ocbimv22026844m.g Octopus bimaculoides Ocbimv22026844m.g I 0.000
Ogr05779 Ophisaurus gracilis Ogr05779 I 0.000
Ogr08842 Ophisaurus gracilis Ogr08842 I 0.000
PHUM473500 Pediculus humanus PHUM473500 I 0.000
PTRK_0001370600 Parastrongyloides trichosuri PTRK_0001370600 I 0.000
Pvit_05670 Pogona vitticeps Pvit_05670 I 0.000
Pvit_16864 Pogona vitticeps Pvit_16864 I 0.000
RPRC011791 Rhodnius prolixus RPRC011791 I 0.000
RSKR_0000377300 Rhabditophanes kr3021 RSKR_0000377300 I 0.000
Sakowv30034885m.g Saccoglossus kowalevskii Sakowv30034885m.g I 0.000
SINV22450 Solenopsis invicta SINV22450 I 0.000
Sjc_0067660 Schistosoma japonicum Sjc_0067660 I 0.000
SMAR006586 Strigamia maritima SMAR006586 I 0.000
Smp_076300 Schistosoma mansoni Smp_076300 I 0.000
SMRZ_0001153601 Schistosoma margrebowiei SMRZ_0001153601 I 0.000
SNAPOd2T00012792001 Oikopleura dioica SNAPOd2T00012792001 I 0.000
SPER_0003672701 Spirometra erinaceieuropaei SPER_0003672701 I 0.000
SPU_000975 Strongylocentrotus purpuratus SPU_000975 I 0.000
SROB_0001179001 Schistosoma rodhaini SROB_0001179001 I 0.000
T265_04564 Opisthorchis viverrini T265_04564 I 0.000
TASK_0000386601 Taenia asiatica TASK_0000386601 I 0.000
TC002814 Tribolium castaneum TC002814 I 0.000
TMUE_s0032003300 Trichuris muris TMUE_s0032003300 I 0.000
TriadG30602 Trichoplax adhaerens TriadG30602 I 0.000
TsM_000061900 Taenia solium TsM_000061900 I 0.000
TTRE_0000174501 Trichuris trichiura TTRE_0000174501 I 0.000
YQE_08285 Dendroctonus ponderosae YQE_08285 I 0.000