ATHB18 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 fgenesh2_kg.2__1356__AT1G70920.1 T218455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.867 1.000
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.867 1.000
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.773 0.684
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.773 0.667
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.773 0.667
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.773 0.649
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.773 0.649
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.773 0.649
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.728 0.667
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.728 0.649
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.728 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__1356__AT1G70920.1 Homeodomain 69 125

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

692 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27401.m000280 Ricinus communis 27401.m000280 I 0.773
BRADI3G21480 Brachypodium distachyon BRADI3G21480 I 0.773
cassava13934.valid.m1 Manihot esculenta cassava13934.valid.m1 I 0.773
cassava17755.valid.m1 Manihot esculenta cassava17755.valid.m1 I 0.773
cassava30036.valid.m1 Manihot esculenta cassava30036.valid.m1 I 0.773
Ca_17224 Cicer arietinum Ca_17224 I 0.773
Ciclev10021374m.g Citrus clementina Ciclev10021374m.g I 0.773
Ciclev10021501m.g Citrus clementina Ciclev10021501m.g I 0.773
Cla005712 Citrullus lanatus Cla005712 I 0.773
Cla021423 Citrullus lanatus Cla021423 I 0.773
Cucsa.259710 Cucumis sativus Cucsa.259710 I 0.773
Cucsa.321080 Cucumis sativus Cucsa.321080 I 0.773
Eucgr.D02105 Eucalyptus grandis Eucgr.D02105 I 0.773
Eucgr.E00400 Eucalyptus grandis Eucgr.E00400 I 0.773
evm.TU.supercontig_101.29 Carica papaya evm.TU.supercontig_101.29 I 0.773
evm.TU.supercontig_89.64 Carica papaya evm.TU.supercontig_89.64 I 0.773
gene08853-v1.0-hybrid Fragaria vesca gene08853-v1.0-hybrid I 0.773
GLYMA05G04990 Glycine max GLYMA05G04990 I 0.773
Gorai.004G195900 Gossypium raimondii Gorai.004G195900 I 0.773
Gorai.007G029200 Gossypium raimondii Gorai.007G029200 I 0.773
Gorai.007G086600 Gossypium raimondii Gorai.007G086600 I 0.773
Gorai.008G107900 Gossypium raimondii Gorai.008G107900 I 0.773
Gorai.008G233200 Gossypium raimondii Gorai.008G233200 I 0.773
GRMZM2G044752 Zea mays GRMZM2G044752 I 0.773
GRMZM2G131476 Zea mays GRMZM2G131476 I 0.773
GSMUA_Achr1G01670_001 Musa acuminata GSMUA_Achr1G01670_001 I 0.773
GSMUA_Achr1G04360_001 Musa acuminata GSMUA_Achr1G04360_001 I 0.773
GSMUA_Achr5G13530_001 Musa acuminata GSMUA_Achr5G13530_001 I 0.773
HOX15 Oryza indica BGIOSGA032409 I 0.773
HOX17 Oryza indica BGIOSGA014600 I 0.773
HOX17 Oryza sativa OS04G0548700 I 0.773
LPERR04G16840 Leersia perrieri LPERR04G16840 I 0.773
LPERR10G00150 Leersia perrieri LPERR10G00150 I 0.773
Lus10004759.g Linum usitatissimum Lus10004759.g I 0.773
Lus10007849.g Linum usitatissimum Lus10007849.g I 0.773
mgf026147m Mimulus guttatus mgf026147m I 0.773
MLOC_54921 Hordeum vulgare MLOC_54921 I 0.773
MTR_8g006705 Medicago truncatula MTR_8g006705 I 0.773
OB04G27770 Oryza brachyantha OB04G27770 I 0.773
OB10G10250 Oryza brachyantha OB10G10250 I 0.773
OBART04G20760 Oryza barthii OBART04G20760 I 0.773
OBART10G00190 Oryza barthii OBART10G00190 I 0.773
OGLUM04G20690 Oryza glumaepatula OGLUM04G20690 I 0.773
OGLUM10G00200 Oryza glumaepatula OGLUM10G00200 I 0.773
OLONG_013754 Oryza longistaminata OLONG_013754 I 0.773
OMERI04G17200 Oryza meridionalis OMERI04G17200 I 0.773
ONIVA04G19000 Oryza nivara ONIVA04G19000 I 0.773
ONIVA10G00410 Oryza nivara ONIVA10G00410 I 0.773
OPUNC04G18440 Oryza punctata OPUNC04G18440 I 0.773
OPUNC10G00220 Oryza punctata OPUNC10G00220 I 0.773
orange1.1g023113m.g Citrus sinensis orange1.1g023113m.g I 0.773
ORGLA04G0178100 Oryza glaberrima ORGLA04G0178100 I 0.773
ORGLA10G0001600 Oryza glaberrima ORGLA10G0001600 I 0.773
ORUFI04G22350 Oryza rufipogon ORUFI04G22350 I 0.773
ORUFI10G00170 Oryza rufipogon ORUFI10G00170 I 0.773
Pavir.Ib02193 Panicum virgatum Pavir.Ib02193 I 0.773
Pavir.J13706 Panicum virgatum Pavir.J13706 I 0.773
PK21887.1 Cannabis sativa PK21887.1 I 0.773
Pm017678 Prunus mume Pm017678 I 0.773
Pm023405 Prunus mume Pm023405 I 0.773
POPTR_0002s13720 Populus trichocarpa POPTR_0002s13720 I 0.773
POPTR_0014s04460 Populus trichocarpa POPTR_0014s04460 I 0.773
PRUPE_ppa008774mg Prunus persica PRUPE_ppa008774mg I 0.773
PRUPE_ppa024161mg Prunus persica PRUPE_ppa024161mg I 0.773
SapurV1A.0124s0290 Salix purpurea SapurV1A.0124s0290 I 0.773
Sb01g027430 Sorghum bicolor Sb01g027430 I 0.773
Sb06g024480 Sorghum bicolor Sb06g024480 I 0.773
Si010958m.g Setaria italica Si010958m.g I 0.773
Si037189m.g Setaria italica Si037189m.g I 0.773
TCM_005689 Theobroma cacao TCM_005689 I 0.773
TCM_015919 Theobroma cacao TCM_015919 I 0.773
VIT_00s0299g00100 Vitis vinifera VIT_00s0299g00100 I 0.773