HMEL016680 (Heliconius melpomene)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 HMEL016680 T219620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.855 0.947
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.855 0.947
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.855 0.947
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.855 0.947
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.855 0.947
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.855 0.947
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.855 0.947
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.855 0.947
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.855 0.947
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.855 0.947
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.855 0.930
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.855 0.930
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.855 0.912
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.855 0.912
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.855 0.912
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.855 0.912
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.855 0.912
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.855 0.912
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.855 0.912
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.855 0.912
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.850 0.912
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.850 0.912
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.850 0.912
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.840 0.842
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.840 0.842
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.840 0.842
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.840 0.842
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.840 0.842
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.840 0.842
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.840 0.842
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.840 0.842
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.840 0.842
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.840 0.842
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.840 0.842
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.834 0.877
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.819 0.895
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.819 0.877
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.819 0.877
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.819 0.877
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.650 0.702
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.641 0.684
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.613 0.544
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.604 0.474
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.604 0.474
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.604 0.474
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.604 0.474
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.604 0.474
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.604 0.474
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.604 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HMEL016680-PA Homeodomain 118 174

Links

Other Homeodomain family TFs
Other Heliconius melpomene TFs

381 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1703276C Xenopus laevis 1703276C N 0.000
1703276D Xenopus laevis 1703276D I 0.000
AARA009718 Anopheles arabiensis AARA009718 N 0.000
AARA011782 Anopheles arabiensis AARA011782 I 0.000
AATE009299 Anopheles atroparvus AATE009299 I 0.000
ACAC_0000669701 Angiostrongylus cantonensis ACAC_0000669701 N 0.000
ACAC_0000671101 Angiostrongylus cantonensis ACAC_0000671101 N 0.000
ACEP24283 Atta cephalotes ACEP24283 N 0.000
ACHR008505 Anopheles christyi ACHR008505 N 0.000
ACOC_0000865601 Angiostrongylus costaricensis ACOC_0000865601 N 0.000
ACUA020431 Anopheles culicifacies ACUA020431 N 0.000
ADIR002916 Anopheles dirus ADIR002916 N 0.000
AEPI008543 Anopheles epiroticus AEPI008543 N 0.000
AEPI010384 Anopheles epiroticus AEPI010384 N 0.000
AFAF003697 Anopheles farauti AFAF003697 N 0.000
AFAF004701 Anopheles farauti AFAF004701 N 0.000
AFUN006006 Anopheles funestus AFUN006006 N 0.000
Alligator_sinensis_CCG001661.1 Alligator sinensis Alligator_sinensis_CCG001661.1 I 0.000
Alligator_sinensis_CCG004967.1 Alligator sinensis Alligator_sinensis_CCG004967.1 N 0.000
Alligator_sinensis_CCG010660.1 Alligator sinensis Alligator_sinensis_CCG010660.1 N 0.000
AMAM004568 Anopheles maculatus AMAM004568 N 0.000
AMEM007254 Anopheles merus AMEM007254 N 0.000
AMIN003814 Anopheles minimus AMIN003814 N 0.000
AMIN006246 Anopheles minimus AMIN006246 N 0.000
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I 0.000
ANCCAN_14745 Ancylostoma caninum ANCCAN_14745 N 0.000
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N 0.000
ANCCAN_25804 Ancylostoma caninum ANCCAN_25804 N 0.000
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I 0.000
ANCDUO_09320 Ancylostoma duodenale ANCDUO_09320 N 0.000
ANCDUO_16102 Ancylostoma duodenale ANCDUO_16102 N 0.000
ANCDUO_22747 Ancylostoma duodenale ANCDUO_22747 N 0.000
AQUA010391 Anopheles quadriannulatus AQUA010391 I 0.000
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N 0.000
ASIM_0000175201 Anisakis simplex ASIM_0000175201 N 0.000
ASIM_0000357501 Anisakis simplex ASIM_0000357501 N 0.000
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N 0.000
ASIS021849 Anopheles sinensis ASIS021849 N 0.000
ASTEI04299 Anopheles stephensi ASTEI04299 N 0.000
A_05161 Schistosoma haematobium A_05161 N 0.000
A_05714 Schistosoma haematobium A_05714 N 0.000
A_08314 Schistosoma haematobium A_08314 N 0.000
BARX1 Homo sapiens ENSG00000131668 D 0.000
BARX2 Ornithorhynchus anatinus ENSOANG00000000573 N 0.000
BGIBMGA006390 Bombyx mori BGIBMGA006390 I 0.000
BGLB001550 Biomphalaria glabrata BGLB001550 N 0.000
BGLB007714 Biomphalaria glabrata BGLB007714 N 0.000
BGLB007768 Biomphalaria glabrata BGLB007768 N 0.000
BTMF_0000546301 Brugia timori BTMF_0000546301 N 0.000
CAA41845 Xenopus laevis CAA41845 N 0.000
CAA41846 Xenopus laevis CAA41846 I 0.000
CBG05223 Caenorhabditis briggsae CBG05223 N 0.000
Cflo_00859--XP_394119.2_APIME Camponotus floridanus Cflo_00859--XP_394119.2_APIME N 0.000
CGOC_0001035201 Cylicostephanus goldi CGOC_0001035201 N 0.000
CLEC004114 Cimex lectularius CLEC004114 N 0.000
Cmyd_10005403 Chelonia mydas Cmyd_10005403 I 0.000
Cmyd_10007343 Chelonia mydas Cmyd_10007343 N 0.000
CPIJ015117 Culex quinquefasciatus CPIJ015117 N 0.000
CpipJ_CPIJ015117 Culex pipiens CpipJ_CPIJ015117 N 0.000
DAPPUDRAFT_50954 Daphnia pulex DAPPUDRAFT_50954 N 0.000
DICVIV_01479 Dictyocaulus viviparus DICVIV_01479 N 0.000
DICVIV_09128 Dictyocaulus viviparus DICVIV_09128 N 0.000
DLX1 Gallus gallus ENSGALG00000018439 I 0.000
DME_0000044501 Dracunculus medinensis DME_0000044501 N 0.000
DME_0000045101 Dracunculus medinensis DME_0000045101 N 0.000
DME_0000947201 Dracunculus medinensis DME_0000947201 N 0.000
ECPE_0000616401 Echinostoma caproni ECPE_0000616401 N 0.000
ENSAMXG00000008007 Astyanax mexicanus ENSAMXG00000008007 I 0.000
ENSCING00000011826 Ciona intestinalis ENSCING00000011826 N 0.000
ENSCSAG00000006765 Chlorocebus sabaeus ENSCSAG00000006765 N 0.000
ENSECAG00000017919 Equus caballus ENSECAG00000017919 I 0.000
ENSFCAG00000025984 Felis catus ENSFCAG00000025984 N 0.000
ENSGALG00000020423 Gallus gallus ENSGALG00000020423 N 0.000
ENSMGAG00000010685 Meleagris gallopavo ENSMGAG00000010685 I 0.000
ENSMLUG00000022220 Myotis lucifugus ENSMLUG00000022220 N 0.000
ENSPMAG00000008834 Petromyzon marinus ENSPMAG00000008834 N 0.000
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I 0.000
ENSXMAG00000013191 Xiphophorus maculatus ENSXMAG00000013191 N 0.000
e_gw.11.656.1 Branchiostoma floridae e_gw.11.656.1 N 0.000
GM19280 Drosophila sechellia FBgn0174180 N 0.000
GPLIN_000113000 Globodera pallida GPLIN_000113000 N 0.000
GPLIN_000138000 Globodera pallida GPLIN_000138000 N 0.000
Hba_10254 Heterorhabditis bacteriophora Hba_10254 N 0.000
Hba_17357 Heterorhabditis bacteriophora Hba_17357 N 0.000
Hba_19301 Heterorhabditis bacteriophora Hba_19301 N 0.000
HelroG148863 Helobdella robusta HelroG148863 N 0.000
hesx1 Danio rerio ENSDARG00000054509 N 0.000
HHAL004742-PA Halyomorpha halys HHAL004742-PA N 0.000
HHAL005220-PA Halyomorpha halys HHAL005220-PA N 0.000
HHAL009617-PA Halyomorpha halys HHAL009617-PA N 0.000
HMEL002756 Heliconius melpomene HMEL002756 N 0.000
HMEL003744 Heliconius melpomene HMEL003744 N 0.000
HNAJ_0000607701 Hymenolepis nana HNAJ_0000607701 N 0.000
hoxa11.S Xenopus laevis XB-GENE-483246 I 0.000
hoxc6.S Xenopus laevis XB-GENE-865143 I 0.000
HPBE_0002029201 Heligmosomoides bakeri HPBE_0002029201 N 0.000
KGM_15359 Danaus plexippus KGM_15359 N 0.000
KGM_21794 Danaus plexippus KGM_21794 I 0.000
LDEC016573 Leptinotarsa decemlineata LDEC016573 N 0.000
LLOJ003466 Lutzomyia longipalpis LLOJ003466 N 0.000
LLOJ004702 Lutzomyia longipalpis LLOJ004702 N 0.000
LOC100912608 Rattus norvegicus ENSRNOG00000050252 I 0.000
maker-nMf.1.1.scaf05303-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf05303-snap-gene-0.8 N 0.000
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N 0.000
MESCA011418 Megaselia scalaris MESCA011418 N 0.000
Minc14799 Meloidogyne incognita Minc14799 N 0.000
Myotis_brandtii_Barx2_10007775 Myotis brandtii Myotis_brandtii_Barx2_10007775 N 0.000
NECAME_04746 Necator americanus NECAME_04746 N 0.000
NECAME_08983 Necator americanus NECAME_08983 N 0.000
NECAME_15451 Necator americanus NECAME_15451 N 0.000
NEMVEDRAFT_v1g101680 Nematostella vectensis NEMVEDRAFT_v1g101680 N 0.000
Ocbimv22010205m.g Octopus bimaculoides Ocbimv22010205m.g N 0.000
Ocbimv22022773m.g Octopus bimaculoides Ocbimv22022773m.g I 0.000
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N 0.000
OFLC_0000421701 Onchocerca flexuosa OFLC_0000421701 N 0.000
Ogr09559 Ophisaurus gracilis Ogr09559 N 0.000
PHUM265030 Pediculus humanus PHUM265030 I 0.000
PPAI007203 Phlebotomus papatasi PPAI007203 N 0.000
PV07_10546 Cladophialophora immunda PV07_10546 N 0.000
PXEA_0000997401 Protopolystoma xenopodis PXEA_0000997401 N 0.000
PXEA_0001530801 Protopolystoma xenopodis PXEA_0001530801 N 0.000
PXEA_0003344501 Protopolystoma xenopodis PXEA_0003344501 N 0.000
scaffold958-EXSNAP2012.2 Pristionchus exspectatus scaffold958-EXSNAP2012.2 N 0.000
SCUD_0000012501 Schistosoma curassoni SCUD_0000012501 N 0.000
SCUD_0000482001 Schistosoma curassoni SCUD_0000482001 I 0.000
SCUD_0001900601 Schistosoma curassoni SCUD_0001900601 N 0.000
Smp_136900 Schistosoma mansoni Smp_136900 N 0.000
SMRZ_0000101601 Schistosoma margrebowiei SMRZ_0000101601 N 0.000
SMTD_0000662501 Schistosoma mattheei SMTD_0000662501 N 0.000
SMTD_0001595501 Schistosoma mattheei SMTD_0001595501 N 0.000
SMU15030938 Schmidtea mediterranea SMU15030938 N 0.000
SNAPOd2T00027099001 Oikopleura dioica SNAPOd2T00027099001 N 0.000
snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 Meloidogyne floridensis snap_masked-nMf.1.1.scaf05842-processed-gene-0.7 N 0.000
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N 0.000
SPER_0002932401 Spirometra erinaceieuropaei SPER_0002932401 N 0.000
Tal_R004953 Tyto alba Tal_R004953 N 0.000
Tal_R008067 Tyto alba Tal_R008067 I 0.000
TASK_0000266001 Taenia asiatica TASK_0000266001 N 0.000
TRE_0000350801 Trichobilharzia regenti TRE_0000350801 N 0.000
TRE_0000664901 Trichobilharzia regenti TRE_0000664901 N 0.000
TsM_000403100 Taenia solium TsM_000403100 N 0.000
TsM_001096000 Taenia solium TsM_001096000 N 0.000
TTAC_0000456101 Hydatigera taeniaeformis TTAC_0000456101 N 0.000
WUBG_02755 Wuchereria bancrofti WUBG_02755 N 0.000
WUBG_18725 Wuchereria bancrofti WUBG_18725 N 0.000
YQE_02583 Dendroctonus ponderosae YQE_02583 N 0.000