CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MESCA004033 *(Megaselia scalaris)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	MESCA004033	T220553_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
dve M02122_2.00	Drosophila melanogaster	NTAATCCV	BGGATTAN	PBM Weirauch et al.(2014) pTH6218	0.867	1.000
AGAP006642 M02035_2.00	Anopheles gambiae	NHTAATCY	RGATTADN	PBM Weirauch et al.(2014) pTH6201	0.866	0.982
NEMVEDRAFT_v1g113057 M02144_2.00	Nematostella vectensis	NYTAATCCBN	NVGGATTARN	PBM Weirauch et al.(2014) pTH6135	0.638	0.333
CRX M00274_2.00	Homo sapiens	NMTAATCCSN	NSGGATTAKN	PBM Barrera et al.(2016) CRX_REF	0.632	0.351
Otx1 M00396_2.00	Mus musculus	NTAAKCYN	NRGMTTAN	PBM Berger et al.(2008) Otx1_2325	0.632	0.351
Otx2 M00418_2.00	Mus musculus	NTAAKMBN	NVKMTTAN	PBM Berger et al.(2008) Otx2_3441	0.632	0.351
Crx M00489_2.00	Mus musculus	NWAAKMBN	NVKMTTWN	PBM Berger et al.(2008) Crx_3485	0.632	0.351
OTX1 M03116_2.00	Homo sapiens	NNTAAKCGGATTANN	NNTAATCCGMTTANN	SELEX Jolma et al.(2013) OTX1_1	0.632	0.351
OTX1 M03117_2.00	Homo sapiens	NTAATCSB	VSGATTAN	SELEX Jolma et al.(2013) OTX1_2	0.632	0.351
OTX2 M03197_2.00	Homo sapiens	NHTAAKCGGATTANN	NNTAATCCGMTTADN	SELEX Jolma et al.(2013) OTX2_1	0.632	0.351
OTX2 M03198_2.00	Homo sapiens	HTAATCCB	VGGATTAD	SELEX Jolma et al.(2013) OTX2_2	0.632	0.351
Otx1 M03249_2.00	Mus musculus	NNTAAKCGGATTANN	NNTAATCCGMTTANN	SELEX Jolma et al.(2013) Otx1_1	0.632	0.351
Otx1 M03250_2.00	Mus musculus	NTAATCCN	NGGATTAN	SELEX Jolma et al.(2013) Otx1_2	0.632	0.351
CRX M04949_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) CRX_FL_HT-SELEX	0.632	0.351
OTX1 M05022_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX1_eDBD_HT-SELEX	0.632	0.351
OTX1 M05024_2.00	Homo sapiens	NTAATCCNNN	NNNGGATTAN	SELEX Yin et al.(2017) OTX1_FL_HT-SELEX	0.632	0.351
OTX2 M05251_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX2_FL_HT-SELEX	0.632	0.351
Crx M08139_2.00	Mus musculus	YTAATCCYCYY	RRGRGGATTAR	ChIP-seq Mathelier et al.(2014) MA0467.1	0.632	0.351
CRX M09132_2.00	Homo sapiens	BYTAATCCBHYYN	NRRDVGGATTARV	Misc Kulakovskiy et al.(2013) CRX_HUMAN.H11MO.0.B	0.632	0.351
OTX2 M09153_2.00	Homo sapiens	BYTAATCCYYN	NRRGGATTARV	Misc Kulakovskiy et al.(2013) OTX2_HUMAN.H11MO.0.A	0.632	0.351
Crx M09208_2.00	Mus musculus	BYTAATCCBHYYN	NRRDVGGATTARV	Misc Kulakovskiy et al.(2013) CRX_MOUSE.H11MO.0.A	0.632	0.351
Otx2 M09183_2.00	Mus musculus	HTAATCCYNYNN	NNRNRGGATTAD	Misc Kulakovskiy et al.(2013) OTX2_MOUSE.H11MO.0.A	0.632	0.351
Crx M09577_2.00	Mus musculus	NYTAATCC	GGATTARN	Misc Heinz et al.(2010) Retina-Crx_GSE20012	0.632	0.351
Otx2 M09569_2.00	Mus musculus	NHTAATCCHB	VDGGATTADN	Misc Heinz et al.(2010) EpiLC-Otx2_GSE56098	0.632	0.351
CRX M10647_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CRX_Q4_01	0.632	0.351
CRX M10648_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CRX_Q4_02	0.632	0.351
OTX1 M10673_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX1_Q5	0.632	0.351
OTX2 M10727_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX2_Q3_01	0.632	0.351
OTX2 M10728_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX2_Q3	0.632	0.351
CRX M00270_2.00	Homo sapiens	NWDAKNN	NNMTHWN	PBM Barrera et al.(2016) CRX_E80A	0.632	0.351
CRX M00275_2.00	Homo sapiens	NMTAATCCSN	NSGGATTAKN	PBM Barrera et al.(2016) CRX_V66I	0.632	0.351
CRX M04950_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) CRX_FL_Methyl-HT-SELEX	0.632	0.351
OTX1 M05023_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX1_eDBD_Methyl-HT-SELEX	0.632	0.351
OTX1 M05025_2.00	Homo sapiens	HTAATCCNHN	NDNGGATTAD	SELEX Yin et al.(2017) OTX1_FL_Methyl-HT-SELEX	0.632	0.351
OTX2 M05252_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX2_FL_Methyl-HT-SELEX	0.632	0.351
oc M03808_2.00	Drosophila melanogaster	HTAATCCB	VGGATTAD	SELEX Nitta et al.(2015) oc_1	0.631	0.333
oc M06502_2.00	Drosophila melanogaster	TAATCC	GGATTA	B1H Mathelier et al.(2014) MA0234.1	0.631	0.333
oc M06282_2.00	Drosophila melanogaster	WTAATCC	GGATTAW	B1H Zhu et al.(2011) Oc_Cell_FBgn0004102	0.631	0.333
oc M06283_2.00	Drosophila melanogaster	NTAATCCB	VGGATTAN	B1H Zhu et al.(2011) Oc_SOLEXA_FBgn0004102	0.631	0.333
oc M09681_2.00	Drosophila melanogaster	HTAATCCN	NGGATTAD	Misc Kulakovskiy et al.(2009) oc	0.631	0.333
CRX M00273_2.00	Homo sapiens	NNYTAATCCVN	NBGGATTARNN	PBM Barrera et al.(2016) CRX_R90W	0.622	0.333
ceh-37 M00674_2.00	Caenorhabditis elegans	HTAATCYN	NRGATTAD	PBM Narasimhan et al.(2015) pTH10716	0.617	0.316
Dmbx1 M00441_2.00	Mus musculus	NTAATCYNN	NNRGATTAN	PBM Berger et al.(2008) Dmbx1_2277	0.615	0.316
ceh-36 M00673_2.00	Caenorhabditis elegans	NWAATCYN	NRGATTWN	PBM Narasimhan et al.(2015) pTH10730	0.615	0.316
DMBX1 M03236_2.00	Homo sapiens	NHTAATCCBN	NVGGATTADN	SELEX Jolma et al.(2013) DMBX1_1	0.615	0.316
DMBX1 M05383_2.00	Homo sapiens	NTAATCSN	NSGATTAN	SELEX Yin et al.(2017) DMBX1_eDBD_HT-SELEX	0.615	0.316
DMBX1 M05384_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) DMBX1_eDBD_Methyl-HT-SELEX	0.615	0.316
ceh-53 M00679_2.00	Caenorhabditis elegans	HTAATCYN	NRGATTAD	PBM Narasimhan et al.(2015) pTH10699	0.615	0.298
HBX4_ECHGR M02195_2.00	Echinococcus granulosus	NHTAATCYNN	NNRGATTADN	PBM Weirauch et al.(2014) pTH6301	0.605	0.316
Gsc M00411_2.00	Mus musculus	NNTAATYBN	NVRATTANN	PBM Berger et al.(2008) Gsc_2327	0.604	0.316
GSC M03146_2.00	Homo sapiens	NHTAATCCNH	DNGGATTADN	SELEX Jolma et al.(2013) GSC_1	0.604	0.316
GSC M05134_2.00	Homo sapiens	NTAATCCB	VGGATTAN	SELEX Yin et al.(2017) GSC_eDBD_HT-SELEX	0.604	0.316
GSC M05136_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) GSC_FL_HT-SELEX	0.604	0.316
gsc M09584_2.00	Xenopus tropicalis	NTAATCYN	NRGATTAN	Misc Heinz et al.(2010) FrogEmbryos-GSC_DRA000576	0.604	0.316
GSC M05135_2.00	Homo sapiens	HTAATCCB	VGGATTAD	SELEX Yin et al.(2017) GSC_eDBD_Methyl-HT-SELEX	0.604	0.316
GSC M05137_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) GSC_FL_Methyl-HT-SELEX	0.604	0.316
CRX M00271_2.00	Homo sapiens	NHDAKNN	NNMTHDN	PBM Barrera et al.(2016) CRX_R41Q	0.599	0.333
CRX M00272_2.00	Homo sapiens	NNHNATNN	NNATNDNN	PBM Barrera et al.(2016) CRX_R41W	0.599	0.333
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MESCA004033-PA	Homeodomain	121	189	RKRNRTFIDPVTEVPKLEQWFAMNTHPSHNLILKYTEDLNRMPYRQKFPRLESKNVQFWFKNRRAKCKR

Links
Other Homeodomain family TFs
Other *Megaselia scalaris* TFs

659 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB008401	Anopheles albimanus	AALB008401	N	0.000
AATE016330	Anopheles atroparvus	AATE016330	N	0.000
ACAC_0000775701	Angiostrongylus cantonensis	ACAC_0000775701	N	0.000
ACEP15037	Atta cephalotes	ACEP15037	N	0.000
ACEP16989	Atta cephalotes	ACEP16989	N	0.000
ACHR003840	Anopheles christyi	ACHR003840	N	0.000
ACOM033136	Anopheles coluzzii	ACOM033136	N	0.000
ACUA001666	Anopheles culicifacies	ACUA001666	N	0.000
ADIR005529	Anopheles dirus	ADIR005529	N	0.000
AEPI000237	Anopheles epiroticus	AEPI000237	N	0.000
AFAF020113	Anopheles farauti	AFAF020113	N	0.000
Alligator_sinensis_CCG019841.1	Alligator sinensis	Alligator_sinensis_CCG019841.1	N	0.000
AMAM001087	Anopheles maculatus	AMAM001087	N	0.000
AMEC011489	Anopheles melas	AMEC011489	N	0.000
AMEC021350	Anopheles melas	AMEC021350	N	0.000
AMEM003504	Anopheles merus	AMEM003504	N	0.000
AMIN004125	Anopheles minimus	AMIN004125	N	0.000
ANCCAN_09768	Ancylostoma caninum	ANCCAN_09768	N	0.000
AQUA008818	Anopheles quadriannulatus	AQUA008818	N	0.000
BGIBMGA000450	Bombyx mori	BGIBMGA000450	N	0.000
BGLB006178	Biomphalaria glabrata	BGLB006178	N	0.000
BGLB009417	Biomphalaria glabrata	BGLB009417	N	0.000
BGLB013890	Biomphalaria glabrata	BGLB013890	N	0.000
BTMF_0001476301	Brugia timori	BTMF_0001476301	N	0.000
Cflo_06216--XP_001121055.1_APIME	Camponotus floridanus	Cflo_06216--XP_001121055.1_APIME	N	0.000
Cmyd_10017525	Chelonia mydas	Cmyd_10017525	N	0.000
CPIJ008461	Culex quinquefasciatus	CPIJ008461	N	0.000
D915_01997	Fasciola hepatica	D915_01997	N	0.000
E5Q_06531	Mixia osmundae	E5Q_06531	N	0.000
ECANG7_03670	Echinococcus canadensis	ECANG7_03670	N	0.000
EEL_0001066701	Elaeophora elaphi	EEL_0001066701	N	0.000
ENSAMXG00000012389	Astyanax mexicanus	ENSAMXG00000012389	N	0.000
ENSAPLG00000015903	Anas platyrhynchos	ENSAPLG00000015903	N	0.000
ENSCJAG00000020654	Callithrix jacchus	ENSCJAG00000020654	N	0.000
ENSGMOG00000007710	Gadus morhua	ENSGMOG00000007710	N	0.000
ENSLACG00000006161	Latimeria chalumnae	ENSLACG00000006161	N	0.000
ENSLOCG00000005910	Lepisosteus oculatus	ENSLOCG00000005910	N	0.000
ENSMEUG00000004221	Macropus eugenii	ENSMEUG00000004221	N	0.000
ENSMEUG00000011038	Macropus eugenii	ENSMEUG00000011038	N	0.000
ENSMEUG00000011815	Macropus eugenii	ENSMEUG00000011815	N	0.000
ENSMICG00000006751	Microcebus murinus	ENSMICG00000006751	N	0.000
ENSTNIG00000002085	Tetraodon nigroviridis	ENSTNIG00000002085	N	0.000
ENSTRUG00000001265	Takifugu rubripes	ENSTRUG00000001265	N	0.000
ENSTSYG00000003698	Tarsius syrichta	ENSTSYG00000003698	N	0.000
GATA2	Cavia porcellus	ENSCPOG00000009802	N	0.000
GATA3	Procavia capensis	ENSPCAG00000005175	N	0.000
GATA5	Tursiops truncatus	ENSTTRG00000011109	N	0.000
GATA5	Pteropus vampyrus	ENSPVAG00000011581	N	0.000
GATA5	Echinops telfairi	ENSETEG00000019185	N	0.000
GB41785	Apis mellifera	GB41785	N	0.000
GPUH_0001622501	Gongylonema pulchrum	GPUH_0001622501	N	0.000
Hba_17474	Heterorhabditis bacteriophora	Hba_17474	N	0.000
HelroG92960	Helobdella robusta	HelroG92960	N	0.000
Hsal_08742--XP_001121055.1_APIME	Harpegnathos saltator	Hsal_08742--XP_001121055.1_APIME	N	0.000
ISCW005453	Ixodes scapularis	ISCW005453	N	0.000
KGM_21940	Danaus plexippus	KGM_21940	N	0.000
L892_g4790	Steinernema scapterisci	L892_g4790	N	0.000
L898_g20040	Steinernema monticolum	L898_g20040	N	0.000
LCUP000677	Lucilia cuprina	LCUP000677	N	0.000
LDEC000517	Leptinotarsa decemlineata	LDEC000517	N	0.000
LDEC012262	Leptinotarsa decemlineata	LDEC012262	N	0.000
LLOJ006332	Lutzomyia longipalpis	LLOJ006332	N	0.000
MESCA005245	Megaselia scalaris	MESCA005245	N	0.000
MESCA009585	Megaselia scalaris	MESCA009585	N	0.000
nAv.1.0.1.g02461	Acanthocheilonema viteae	nAv.1.0.1.g02461	N	0.000
NBR_0000440401	Nippostrongylus brasiliensis	NBR_0000440401	N	0.000
nLs.2.1.2.g08039	Litomosoides sigmodontis	nLs.2.1.2.g08039	N	0.000
nOo.2.0.1.g05402	Onchocerca ochengi	nOo.2.0.1.g05402	N	0.000
NV16862	Nasonia vitripennis	NV16862	N	0.000
OFLC_0001290601	Onchocerca flexuosa	OFLC_0001290601	N	0.000
Ogr01516	Ophisaurus gracilis	Ogr01516	N	0.000
Ogr02074	Ophisaurus gracilis	Ogr02074	N	0.000
Ogr18767	Ophisaurus gracilis	Ogr18767	N	0.000
Pvit_13887	Pogona vitticeps	Pvit_13887	N	0.000
PXEA_0000210501	Protopolystoma xenopodis	PXEA_0000210501	N	0.000
SCUD_0000076401	Schistosoma curassoni	SCUD_0000076401	N	0.000
SMAR009870	Strigamia maritima	SMAR009870	N	0.000
SMTD_0001448601	Schistosoma mattheei	SMTD_0001448601	N	0.000
SNAPOd2T00000006001	Oikopleura dioica	SNAPOd2T00000006001	N	0.000
SNAPOd2T00000013001	Oikopleura dioica	SNAPOd2T00000013001	N	0.000
SROB_0001536801	Schistosoma rodhaini	SROB_0001536801	N	0.000
SSLN_0002001801	Schistocephalus solidus	SSLN_0002001801	N	0.000
SVUK_0000185901	Strongylus vulgaris	SVUK_0000185901	N	0.000
TASK_0000051701	Taenia asiatica	TASK_0000051701	N	0.000
TCLT_0000454301	Thelazia callipaeda	TCLT_0000454301	N	0.000
TCNE_0000673201	Toxocara canis	TCNE_0000673201	N	0.000
TTAC_0001016601	Hydatigera taeniaeformis	TTAC_0001016601	N	0.000
WBGene00241813	Onchocerca volvulus	WBGene00241813	N	0.000
WUBG_05471	Wuchereria bancrofti	WUBG_05471	N	0.000

MESCA004033 (Megaselia scalaris) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

659 Related TFs

MESCA004033 **(Megaselia scalaris)
Homeodomain**