CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MTR_2g094520 *(Medicago truncatula)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	MTR_2g094520	T220789_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-9 M06898_2.00	Arabidopsis thaliana	DWWDRTAATGATKAH	DTMATCATTAYHWWH	Dap-seq OMalley et al.(2016) PHV_col_a	0.785	0.895
ATHB-9 M02682_2.00	Arabidopsis thaliana	HNHHGTAATGATTRCDYBS	SVRHGYAATCATTACDDND	SELEX Mathelier et al.(2014) MA0573.1	0.785	0.895
ATHB-9 M10623_2.00	Arabidopsis thaliana	HNHHGTAATGATTRCDYBS	SVRHGYAATCATTACDDND	Transfac Matys et al.(2006) P$ATHB9_01	0.785	0.895
ATHB-15 M00864_2.00	Arabidopsis thaliana	AATAATTACT	AGTAATTATT	PBM Franco-Zorrilla et al.(2014) ICU4	0.781	0.860
ATHB-15 M06899_2.00	Arabidopsis thaliana	DWWDRTAATGATKAH	DTMATCATTAYHWWH	Dap-seq OMalley et al.(2016) ATHB15_col_a	0.781	0.860
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AES67503	Homeodomain	21	81	SGKYVRYTAEQIEALEKVYVECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQ

Links
Other Homeodomain family TFs
Other *Medicago truncatula* TFs

333 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_01039	Capronia coronata	A1O1_01039	N	0.000
A1O3_07515	Capronia epimyces	A1O3_07515	N	0.000
A1O5_04221	Cladophialophora psammophila	A1O5_04221	N	0.000
A1O7_00084	Cladophialophora yegresii	A1O7_00084	N	0.000
A1O9_13137	Exophiala aquamarina	A1O9_13137	N	0.000
AOL_s00054g326	Arthrobotrys oligospora	AOL_s00054g326	I	0.000
DRE_01415	Drechslerella stenobrocha	DRE_01415	I	0.000
G647_00094	Cladophialophora carrionii	G647_00094	N	0.000
H072_1719	Dactylellina haptotyla	H072_1719	I	0.000
HMPREF1541_09623	Cyphellophora europaea	HMPREF1541_09623	N	0.000
PV04_02016	Capronia semiimmersa	PV04_02016	N	0.000
PV05_10912	Exophiala xenobiotica	PV05_10912	N	0.000
PV06_03658	Exophiala oligosperma	PV06_03658	N	0.000
PV07_10758	Cladophialophora immunda	PV07_10758	N	0.000
PV07_12748	Cladophialophora immunda	PV07_12748	N	0.000
PV08_06067	Exophiala spinifera	PV08_06067	N	0.000
PV10_09038	Exophiala mesophila	PV10_09038	N	0.000
PV11_07856	Exophiala sideris	PV11_07856	N	0.000
Z517_08888	Fonsecaea pedrosoi	Z517_08888	N	0.000
Z518_07944	Rhinocladiella mackenziei	Z518_07944	N	0.000