MTR_4g058970 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_4g058970 T220809_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.863 0.946
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.863 0.946
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.863 0.946
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.857 0.911
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.857 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH30037 Homeodomain 27 86

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R013832 Calypte anna Aan_R013832 I 0.000
AATE014785 Anopheles atroparvus AATE014785 I 0.000
ADIR005096 Anopheles dirus ADIR005096 I 0.000
AEPI009051 Anopheles epiroticus AEPI009051 I 0.000
AFAF016726 Anopheles farauti AFAF016726 I 0.000
Afo_R000177 Aptenodytes forsteri Afo_R000177 I 0.000
Afo_R007655 Aptenodytes forsteri Afo_R007655 I 0.000
AFUN000829 Anopheles funestus AFUN000829 I 0.000
Alligator_sinensis_CCG003592.1 Alligator sinensis Alligator_sinensis_CCG003592.1 I 0.000
Alligator_sinensis_CCG020663.1 Alligator sinensis Alligator_sinensis_CCG020663.1 I 0.000
AMEC017008 Anopheles melas AMEC017008 I 0.000
AQUA011339 Anopheles quadriannulatus AQUA011339 I 0.000
ARNT Anolis carolinensis ENSACAG00000011254 I 0.000
ARNT Bos taurus ENSBTAG00000021037 I 0.000
ARNT Canis familiaris ENSCAFG00000012149 I 0.000
ARNT Choloepus hoffmanni ENSCHOG00000010045 I 0.000
arnt Ciona intestinalis ENSCING00000008102 I 0.000
ARNT Callithrix jacchus ENSCJAG00000006839 I 0.000
ARNT Cavia porcellus ENSCPOG00000014578 I 0.000
ARNT Dasypus novemcinctus ENSDNOG00000005093 I 0.000
ARNT Equus caballus ENSECAG00000009602 I 0.000
ARNT Erinaceus europaeus ENSEEUG00000007500 I 0.000
ARNT Echinops telfairi ENSETEG00000001280 I 0.000
ARNT Felis catus ENSFCAG00000003644 I 0.000
ARNT Homo sapiens ENSG00000143437 D 0.000
arnt Gasterosteus aculeatus ENSGACG00000011686 I 0.000
ARNT Gallus gallus ENSGALG00000000751 I 0.000
ARNT Gorilla gorilla ENSGGOG00000015383 I 0.000
ARNT Loxodonta africana ENSLAFG00000011282 I 0.000
ARNT Meleagris gallopavo ENSMGAG00000000943 I 0.000
ARNT Microcebus murinus ENSMICG00000005872 I 0.000
ARNT Myotis lucifugus ENSMLUG00000003502 I 0.000
ARNT Macaca mulatta ENSMMUG00000000541 I 0.000
ARNT Monodelphis domestica ENSMODG00000018814 I 0.000
Arnt Mus musculus ENSMUSG00000015522 D 0.000
ARNT Ornithorhynchus anatinus ENSOANG00000004580 I 0.000
ARNT Oryctolagus cuniculus ENSOCUG00000013582 I 0.000
ARNT Otolemur garnettii ENSOGAG00000004523 I 0.000
ARNT Ochotona princeps ENSOPRG00000010374 I 0.000
ARNT Oryzias latipes ENSORLG00000010551 I 0.000
ARNT Procavia capensis ENSPCAG00000008485 I 0.000
ARNT Pan troglodytes ENSPTRG00000001266 I 0.000
ARNT Pteropus vampyrus ENSPVAG00000004354 I 0.000
Arnt Rattus norvegicus ENSRNOG00000031174 I 0.000
ARNT Sorex araneus ENSSARG00000005490 I 0.000
ARNT Sus scrofa ENSSSCG00000006646 I 0.000
ARNT Taeniopygia guttata ENSTGUG00000004647 I 0.000
ARNT Tetraodon nigroviridis ENSTNIG00000008064 I 0.000
ARNT Takifugu rubripes ENSTRUG00000014504 I 0.000
ARNT Tursiops truncatus ENSTTRG00000007388 I 0.000
ARNT Vicugna pacos ENSVPAG00000005439 I 0.000
arnt Xenopus tropicalis XB-GENE-855450 I 0.000
arnt.L Xenopus laevis XB-GENE-17346408 I 0.000
arnt.S Xenopus laevis XB-GENE-866594 I 0.000
ARNT2 Anolis carolinensis ENSACAG00000011731 I 0.000
ARNT2 Canis familiaris ENSCAFG00000013922 I 0.000
ARNT2 Choloepus hoffmanni ENSCHOG00000012285 I 0.000
ARNT2 Callithrix jacchus ENSCJAG00000007640 I 0.000
ARNT2 Cavia porcellus ENSCPOG00000012997 I 0.000
arnt2 Danio rerio ENSDARG00000103697 I 0.000
ARNT2 Dasypus novemcinctus ENSDNOG00000046568 I 0.000
ARNT2 Equus caballus ENSECAG00000015748 I 0.000
ARNT2 Felis catus ENSFCAG00000012936 I 0.000
ARNT2 Homo sapiens ENSG00000172379 D 0.000
arnt2 Gasterosteus aculeatus ENSGACG00000013947 I 0.000
ARNT2 Gallus gallus ENSGALG00000006445 I 0.000
ARNT2 Gorilla gorilla ENSGGOG00000012245 I 0.000
ARNT2 Loxodonta africana ENSLAFG00000021559 I 0.000
ARNT2 Meleagris gallopavo ENSMGAG00000008186 I 0.000
ARNT2 Microcebus murinus ENSMICG00000015661 I 0.000
ARNT2 Macaca mulatta ENSMMUG00000011566 I 0.000
ARNT2 Monodelphis domestica ENSMODG00000019416 I 0.000
Arnt2 Mus musculus ENSMUSG00000015709 D 0.000
ARNT2 Oryctolagus cuniculus ENSOCUG00000017566 I 0.000
ARNT2 Otolemur garnettii ENSOGAG00000011634 I 0.000
ARNT2 Pan troglodytes ENSPTRG00000007363 I 0.000
ARNT2 Pteropus vampyrus ENSPVAG00000003755 I 0.000
Arnt2 Rattus norvegicus ENSRNOG00000013017 D 0.000
ARNT2 Sorex araneus ENSSARG00000012144 I 0.000
ARNT2 Tupaia belangeri ENSTBEG00000015444 I 0.000
ARNT2 Taeniopygia guttata ENSTGUG00000008015 I 0.000
arnt2 Takifugu rubripes ENSTRUG00000000793 I 0.000
ARNT2 Tursiops truncatus ENSTTRG00000003099 I 0.000
arnt2 Xenopus tropicalis XB-GENE-487404 I 0.000
arnt2.L Xenopus laevis XB-GENE-17338344 I 0.000
arnt2.S Xenopus laevis XB-GENE-487408 I 0.000
BGIBMGA003472 Bombyx mori BGIBMGA003472 I 0.000
Brh_R012646 Buceros rhinoceros Brh_R012646 I 0.000
CLEC002917 Cimex lectularius CLEC002917 I 0.000
CLEC012864 Cimex lectularius CLEC012864 I 0.000
Cmyd_10007604 Chelonia mydas Cmyd_10007604 I 0.000
Cmyd_10021146 Chelonia mydas Cmyd_10021146 I 0.000
DAPPUDRAFT_309730 Daphnia pulex DAPPUDRAFT_309730 I 0.000
ENSAMEG00000001200 Ailuropoda melanoleuca ENSAMEG00000001200 I 0.000
ENSAMEG00000006241 Ailuropoda melanoleuca ENSAMEG00000006241 I 0.000
ENSAMXG00000012473 Astyanax mexicanus ENSAMXG00000012473 I 0.000
ENSAMXG00000019978 Astyanax mexicanus ENSAMXG00000019978 I 0.000
ENSAPLG00000010837 Anas platyrhynchos ENSAPLG00000010837 I 0.000
ENSAPLG00000013397 Anas platyrhynchos ENSAPLG00000013397 I 0.000
ENSBTAG00000047587 Bos taurus ENSBTAG00000047587 I 0.000
ENSBTAP00000028023-D1 Bos grunniens ENSBTAP00000028023-D1 I 0.000
ENSCSAG00000015083 Chlorocebus sabaeus ENSCSAG00000015083 I 0.000
ENSCSAG00000018038 Chlorocebus sabaeus ENSCSAG00000018038 I 0.000
ENSDORG00000004181 Dipodomys ordii ENSDORG00000004181 I 0.000
ENSDORG00000014121 Dipodomys ordii ENSDORG00000014121 I 0.000
ENSFALG00000005800 Ficedula albicollis ENSFALG00000005800 I 0.000
ENSGMOG00000006058 Gadus morhua ENSGMOG00000006058 I 0.000
ENSLACG00000008884 Latimeria chalumnae ENSLACG00000008884 I 0.000
ENSLOCG00000012783 Lepisosteus oculatus ENSLOCG00000012783 I 0.000
ENSMEUG00000003050 Macropus eugenii ENSMEUG00000003050 I 0.000
ENSMPUG00000004365 Mustela putorius furo ENSMPUG00000004365 I 0.000
ENSMPUG00000015447 Mustela putorius furo ENSMPUG00000015447 I 0.000
ENSNLEG00000008951 Nomascus leucogenys ENSNLEG00000008951 I 0.000
ENSNLEG00000009971 Nomascus leucogenys ENSNLEG00000009971 I 0.000
ENSOANG00000028789 Ornithorhynchus anatinus ENSOANG00000028789 I 0.000
ENSOARG00000015391 Ovis aries ENSOARG00000015391 I 0.000
ENSOARG00000020870 Ovis aries ENSOARG00000020870 I 0.000
ENSONIG00000001978 Oreochromis niloticus ENSONIG00000001978 I 0.000
ENSONIG00000006431 Oreochromis niloticus ENSONIG00000006431 I 0.000
ENSORLG00000019479 Oryzias latipes ENSORLG00000019479 I 0.000
ENSP00000307479 Macaca fascicularis ENSP00000307479 I 0.000
ENSP00000307479-D1 Bos grunniens ENSP00000307479-D1 I 0.000
ENSP00000351407 Macaca fascicularis ENSP00000351407 I 0.000
ENSPANG00000015681 Papio anubis ENSPANG00000015681 I 0.000
ENSPANG00000016773 Papio anubis ENSPANG00000016773 I 0.000
ENSPFOG00000000603 Poecilia formosa ENSPFOG00000000603 I 0.000
ENSPPYG00000000888 Pongo abelii ENSPPYG00000000888 I 0.000
ENSPPYG00000006714 Pongo abelii ENSPPYG00000006714 I 0.000
ENSPSIG00000008480 Pelodiscus sinensis ENSPSIG00000008480 I 0.000
ENSPSIG00000010366 Pelodiscus sinensis ENSPSIG00000010366 I 0.000
ENSSHAG00000012227 Sarcophilus harrisii ENSSHAG00000012227 I 0.000
ENSSHAG00000012937 Sarcophilus harrisii ENSSHAG00000012937 I 0.000
ENSSSCG00000001781 Sus scrofa ENSSSCG00000001781 I 0.000
ENSSTOG00000013876 Ictidomys tridecemlineatus ENSSTOG00000013876 I 0.000
ENSTNIG00000004348 Tetraodon nigroviridis ENSTNIG00000004348 I 0.000
ENSTSYG00000001890 Tarsius syrichta ENSTSYG00000001890 I 0.000
ENSTSYG00000006074 Tarsius syrichta ENSTSYG00000006074 I 0.000
estExt_fgenesh2_pg.C_1460068 Branchiostoma floridae estExt_fgenesh2_pg.C_1460068 I 0.000
GA11313 Drosophila pseudoobscura FBgn0071367 I 0.000
GD20825 Drosophila simulans FBgn0192287 I 0.000
GE24803 Drosophila yakuba FBgn0241904 I 0.000
GF18433 Drosophila ananassae FBgn0095451 I 0.000
Gfo_R004222 Geospiza fortis Gfo_R004222 I 0.000
Gfo_R011690 Geospiza fortis Gfo_R011690 I 0.000
GG17399 Drosophila erecta FBgn0109625 I 0.000
GH18221 Drosophila grimshawi FBgn0125689 I 0.000
GI10175 Drosophila mojavensis FBgn0132941 I 0.000
GJ10876 Drosophila virilis FBgn0198144 I 0.000
GK11420 Drosophila willistoni FBgn0213431 I 0.000
GL12493 Drosophila persimilis FBgn0150099 I 0.000
GM26289 Drosophila sechellia FBgn0181143 I 0.000
HHAL008564-PA Halyomorpha halys HHAL008564-PA I 0.000
HHAL009348-PA Halyomorpha halys HHAL009348-PA I 0.000
HMEL013329 Heliconius melpomene HMEL013329 I 0.000
ISCW023999 Ixodes scapularis ISCW023999 I 0.000
KGM_04621 Danaus plexippus KGM_04621 I 0.000
LCUP007387 Lucilia cuprina LCUP007387 I 0.000
LDEC004670 Leptinotarsa decemlineata LDEC004670 I 0.000
LLOJ003291 Lutzomyia longipalpis LLOJ003291 I 0.000
MCINX011636 Melitaea cinxia MCINX011636 I 0.000
MDOA015409 Musca domestica MDOA015409 I 0.000
Myotis_brandtii_ARNT2_10004786 Myotis brandtii Myotis_brandtii_ARNT2_10004786 I 0.000
Myotis_brandtii_ARNT_10031836 Myotis brandtii Myotis_brandtii_ARNT_10031836 I 0.000
NV11924 Nasonia vitripennis NV11924 I 0.000
Ogr07219 Ophisaurus gracilis Ogr07219 I 0.000
PHUM505970 Pediculus humanus PHUM505970 I 0.000
Pvit_04978 Pogona vitticeps Pvit_04978 I 0.000
Pvit_13617 Pogona vitticeps Pvit_13617 I 0.000
RPRC004351 Rhodnius prolixus RPRC004351 I 0.000
Sakowv30011795m.g Saccoglossus kowalevskii Sakowv30011795m.g I 0.000
SINV17691 Solenopsis invicta SINV17691 I 0.000
Tal_R007034 Tyto alba Tal_R007034 I 0.000
Tal_R013361 Tyto alba Tal_R013361 I 0.000
TC004710 Tribolium castaneum TC004710 I 0.000
tgo Drosophila melanogaster FBgn0264075 D 0.000