OBART03G29660 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART03G29660 T221321_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.622
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.618 0.444
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.618 0.444
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.618 0.444
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.618 0.444
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.610 0.489
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G29660.1 Homeodomain 124 168

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R014018 Calypte anna Aan_R014018 I 0.000
Afo_R007505 Aptenodytes forsteri Afo_R007505 I 0.000
Brh_R001259 Buceros rhinoceros Brh_R001259 I 0.000
ENSAPLG00000005140 Anas platyrhynchos ENSAPLG00000005140 I 0.000
ENSCPOG00000012221 Cavia porcellus ENSCPOG00000012221 I 0.000
ENSCSAG00000015201 Chlorocebus sabaeus ENSCSAG00000015201 I 0.000
ENSFALG00000005224 Ficedula albicollis ENSFALG00000005224 I 0.000
ENSFCAG00000008102 Felis catus ENSFCAG00000008102 I 0.000
ENSLACG00000002338 Latimeria chalumnae ENSLACG00000002338 I 0.000
ENSLOCG00000011317 Lepisosteus oculatus ENSLOCG00000011317 I 0.000
ENSMGAG00000012235 Meleagris gallopavo ENSMGAG00000012235 I 0.000
ENSMLUG00000002698 Myotis lucifugus ENSMLUG00000002698 I 0.000
ENSMPUG00000018132 Mustela putorius furo ENSMPUG00000018132 I 0.000
ENSNLEG00000003036 Nomascus leucogenys ENSNLEG00000003036 I 0.000
ENSOARG00000017698 Ovis aries ENSOARG00000017698 I 0.000
ENSOGAG00000033061 Otolemur garnettii ENSOGAG00000033061 I 0.000
ENSP00000395926 Macaca fascicularis ENSP00000395926 I 0.000
ENSP00000395926-D1 Bos grunniens ENSP00000395926-D1 I 0.000
ENSPANG00000007998 Papio anubis ENSPANG00000007998 I 0.000
ENSPSIG00000017568 Pelodiscus sinensis ENSPSIG00000017568 I 0.000
ENSSTOG00000023336 Ictidomys tridecemlineatus ENSSTOG00000023336 I 0.000
Gfo_R007861 Geospiza fortis Gfo_R007861 I 0.000
Myotis_brandtii_POU6F2_10011220 Myotis brandtii Myotis_brandtii_POU6F2_10011220 I 0.000
Ogr18087 Ophisaurus gracilis Ogr18087 I 0.000
POU6F2 Taeniopygia guttata ENSTGUG00000001859 I 0.000
pou6f2 Xenopus tropicalis XB-GENE-853682 I 0.000
Pou6f2 Rattus norvegicus ENSRNOG00000013237 I 0.000
POU6F2 Pteropus vampyrus ENSPVAG00000012960 I 0.000
POU6F2 Pan troglodytes ENSPTRG00000019105 I 0.000
Pou6f2 Mus musculus ENSMUSG00000009734 I 0.000
POU6F2 Microcebus murinus ENSMICG00000007361 I 0.000
POU6F2 Loxodonta africana ENSLAFG00000008294 I 0.000
POU6F2 Gorilla gorilla ENSGGOG00000006718 I 0.000
POU6F2 Homo sapiens ENSG00000106536 D 0.000
POU6F2 Echinops telfairi ENSETEG00000016373 I 0.000
POU6F2 Erinaceus europaeus ENSEEUG00000006653 I 0.000
POU6F2 Equus caballus ENSECAG00000013209 I 0.000
POU6F2 Choloepus hoffmanni ENSCHOG00000003691 I 0.000
POU6F2 Canis familiaris ENSCAFG00000003571 I 0.000
Pvit_04153 Pogona vitticeps Pvit_04153 I 0.000
Tal_R002298 Tyto alba Tal_R002298 I 0.000