OGLUM01G07380 (Oryza glumaepatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OGLUM01G07380 T221386_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.780 0.860
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.780 0.860
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.780 0.860
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.775 0.860
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.775 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM01G07380.1 Homeodomain 10 70
OGLUM01G07380.2 Homeodomain 10 70
OGLUM01G07380.3 Homeodomain 10 70

Links

Other Homeodomain family TFs
Other Oryza glumaepatula TFs

331 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_02610 Ascaris suum ASU_02610 N 0.000
nOo.2.0.1.g05364 Onchocerca ochengi nOo.2.0.1.g05364 N 0.000
TCNE_0001553601 Toxocara canis TCNE_0001553601 N 0.000
WBGene00246599 Onchocerca volvulus WBGene00246599 N 0.000