ORUFI03G00510 (Oryza rufipogon)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORUFI03G00510 T221903_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.848 0.893
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.848 0.893
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.845 0.893
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.845 0.893
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.845 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI03G00510.1 Homeodomain 26 85
ORUFI03G00510.2 Homeodomain 26 85
ORUFI03G00510.3 Homeodomain 26 85
ORUFI03G00510.4 Homeodomain 26 85

Links

Other Homeodomain family TFs
Other Oryza rufipogon TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_76 Arabidopsis lyrata Al_scaffold_0007_76 I 0.000
Aquca_006_00159 Aquilegia coerulea Aquca_006_00159 I 0.000
AT4G38900 Arabidopsis thaliana AT4G38900 I 0.000
BGIOSGA011761 Oryza indica BGIOSGA011761 N 0.000
BGIOSGA029105 Oryza indica BGIOSGA029105 I 0.000
BGIOSGA029106 Oryza indica BGIOSGA029106 I 0.000
Bo3g149620 Brassica oleracea Bo3g149620 I 0.000
Bo7g119550 Brassica oleracea Bo7g119550 I 0.000
Bostr.25542s0069 Boechera stricta Bostr.25542s0069 I 0.000
Bra010722 Brassica rapa Bra010722 I 0.000
Bra033582 Brassica rapa Bra033582 I 0.000
BRADI1G76690 Brachypodium distachyon BRADI1G76690 N 0.000
BRADI3G31890 Brachypodium distachyon BRADI3G31890 N 0.000
BRADI3G41980 Brachypodium distachyon BRADI3G41980 I 0.000
BRADI5G14497 Brachypodium distachyon BRADI5G14497 I 0.000
Cagra.1383s0070 Capsella grandiflora Cagra.1383s0070 N 0.000
Carubv10004500m.g Capsella rubella Carubv10004500m.g N 0.000
cassava30160.valid.m1 Manihot esculenta cassava30160.valid.m1 I 0.000
cassava38273.valid.m1 Manihot esculenta cassava38273.valid.m1 I 0.000
Ca_27693 Cicer arietinum Ca_27693 I 0.000
Ciclev10028062m.g Citrus clementina Ciclev10028062m.g I 0.000
Cla016124 Citrullus lanatus Cla016124 I 0.000
Cla016125 Citrullus lanatus Cla016125 I 0.000
Cucsa.382180 Cucumis sativus Cucsa.382180 I 0.000
Cucsa.382190 Cucumis sativus Cucsa.382190 I 0.000
estExt_gwp_gw1.C_200078 Physcomitrella patens estExt_gwp_gw1.C_200078 I 0.000
estExt_gwp_gw1.C_5120003 Physcomitrella patens estExt_gwp_gw1.C_5120003 I 0.000
Eucgr.I01335 Eucalyptus grandis Eucgr.I01335 I 0.000
evm.TU.supercontig_150.7 Carica papaya evm.TU.supercontig_150.7 I 0.000
evm.TU.supercontig_81.160 Carica papaya evm.TU.supercontig_81.160 I 0.000
e_gw1.20.99.1 Physcomitrella patens e_gw1.20.99.1 I 0.000
F775_32059 Aegilops tauschii F775_32059 I 0.000
F775_33214 Aegilops tauschii F775_33214 N 0.000
gene01680-v1.0-hybrid Fragaria vesca gene01680-v1.0-hybrid I 0.000
GLYMA04G02850 Glycine max GLYMA04G02850 I 0.000
GLYMA11G11791 Glycine max GLYMA11G11791 I 0.000
GLYMA12G04050 Glycine max GLYMA12G04050 I 0.000
Gorai.001G243800 Gossypium raimondii Gorai.001G243800 I 0.000
Gorai.005G248900 Gossypium raimondii Gorai.005G248900 I 0.000
Gorai.011G140400 Gossypium raimondii Gorai.011G140400 I 0.000
GRMZM2G353553 Zea mays GRMZM2G353553 N 0.000
GRMZM2G428184 Zea mays GRMZM2G428184 N 0.000
GRMZM2G473274 Zea mays GRMZM2G473274 N 0.000
GSMUA_Achr11G14990_001 Musa acuminata GSMUA_Achr11G14990_001 I 0.000
GSMUA_Achr1G08090_001 Musa acuminata GSMUA_Achr1G08090_001 N 0.000
GSMUA_Achr3G12290_001 Musa acuminata GSMUA_Achr3G12290_001 I 0.000
GSMUA_Achr5G25700_001 Musa acuminata GSMUA_Achr5G25700_001 I 0.000
GSMUA_Achr8G12090_001 Musa acuminata GSMUA_Achr8G12090_001 I 0.000
GSMUA_AchrUn_randomG00680_001 Musa acuminata GSMUA_AchrUn_randomG00680_001 I 0.000
gw1.20.225.1 Physcomitrella patens gw1.20.225.1 I 0.000
LPERR03G02000 Leersia perrieri LPERR03G02000 N 0.000
LPERR10G12670 Leersia perrieri LPERR10G12670 N 0.000
Lus10018061.g Linum usitatissimum Lus10018061.g I 0.000
Lus10042057.g Linum usitatissimum Lus10042057.g I 0.000
mgf000302m Mimulus guttatus mgf000302m I 0.000
mgf004912m Mimulus guttatus mgf004912m I 0.000
MLOC_10725 Hordeum vulgare MLOC_10725 N 0.000
MLOC_64362 Hordeum vulgare MLOC_64362 I 0.000
MLOC_66865 Hordeum vulgare MLOC_66865 N 0.000
MLOC_75510 Hordeum vulgare MLOC_75510 I 0.000
MTR_1g023690 Medicago truncatula MTR_1g023690 N 0.000
MTR_4g072090 Medicago truncatula MTR_4g072090 I 0.000
OB03G12130 Oryza brachyantha OB03G12130 N 0.000
OB10G23730 Oryza brachyantha OB10G23730 N 0.000
OBART03G02190 Oryza barthii OBART03G02190 N 0.000
OLONG_011520 Oryza longistaminata OLONG_011520 N 0.000
OLONG_016151 Oryza longistaminata OLONG_016151 N 0.000
OMERI03G02030 Oryza meridionalis OMERI03G02030 N 0.000
ONIVA03G01800 Oryza nivara ONIVA03G01800 N 0.000
OPUNC03G01930 Oryza punctata OPUNC03G01930 N 0.000
OPUNC10G15060 Oryza punctata OPUNC10G15060 N 0.000
orange1.1g007579m.g Citrus sinensis orange1.1g007579m.g I 0.000
ORGLA03G0019600 Oryza glaberrima ORGLA03G0019600 N 0.000
ORUFI03G01930 Oryza rufipogon ORUFI03G01930 N 0.000
OS03G0127500 Oryza sativa OS03G0127500 N 0.000
OS10G0531900 Oryza sativa OS10G0531900 N 0.000
Pavir.Ia02926 Panicum virgatum Pavir.Ia02926 N 0.000
Pavir.Ib00162 Panicum virgatum Pavir.Ib00162 N 0.000
Pavir.J19159 Panicum virgatum Pavir.J19159 N 0.000
Pavir.J22781 Panicum virgatum Pavir.J22781 N 0.000
Pavir.J29906 Panicum virgatum Pavir.J29906 N 0.000
PDK_20s1312701g003 Phoenix dactylifera PDK_20s1312701g003 I 0.000
PGSC0003DMG400001659 Solanum tuberosum PGSC0003DMG400001659 I 0.000
PK00843.1 Cannabis sativa PK00843.1 I 0.000
POPTR_0004s17080 Populus trichocarpa POPTR_0004s17080 I 0.000
POPTR_0009s12830 Populus trichocarpa POPTR_0009s12830 I 0.000
SapurV1A.0091s0130 Salix purpurea SapurV1A.0091s0130 I 0.000
SapurV1A.0379s0290 Salix purpurea SapurV1A.0379s0290 I 0.000
Sb01g030770 Sorghum bicolor Sb01g030770 N 0.000
Sb01g048710 Sorghum bicolor Sb01g048710 N 0.000
Sb06g021350 Sorghum bicolor Sb06g021350 I 0.000
SELMODRAFT_129846 Selaginella moellendorffii SELMODRAFT_129846 I 0.000
SELMODRAFT_34663 Selaginella moellendorffii SELMODRAFT_34663 I 0.000
SELMODRAFT_77868 Selaginella moellendorffii SELMODRAFT_77868 I 0.000
Si035841m.g Setaria italica Si035841m.g N 0.000
Si039566m.g Setaria italica Si039566m.g N 0.000
Solyc01g110480.2 Solanum lycopersicum Solyc01g110480.2 I 0.000
TCM_006766 Theobroma cacao TCM_006766 I 0.000
Thhalv10024895m.g Eutrema salsugineum Thhalv10024895m.g I 0.000
Traes_1AL_2AC682D6D Triticum aestivum Traes_1AL_2AC682D6D N 0.000
Traes_2AL_FA1957F59 Triticum aestivum Traes_2AL_FA1957F59 I 0.000
Traes_7BS_7B68879A9 Triticum aestivum Traes_7BS_7B68879A9 I 0.000
Traes_7DS_3463CAE33 Triticum aestivum Traes_7DS_3463CAE33 I 0.000
TRIUR3_15472 Triticum urartu TRIUR3_15472 N 0.000
TRIUR3_20880 Triticum urartu TRIUR3_20880 N 0.000
TRIUR3_31242 Triticum urartu TRIUR3_31242 I 0.000
VIT_03s0038g00860 Vitis vinifera VIT_03s0038g00860 I 0.000