PGSC0003DMG400002616 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400002616 T222142_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.867 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.867 0.982
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400006735 Homeodomain 14 73

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00688 Capronia coronata A1O1_00688 N 0.000
A1O5_06529 Cladophialophora psammophila A1O5_06529 N 0.000
A1O7_00797 Cladophialophora yegresii A1O7_00797 N 0.000
G647_00846 Cladophialophora carrionii G647_00846 N 0.000
HMPREF1120_06272 Exophiala dermatitidis HMPREF1120_06272 N 0.000
MGG_00329 Magnaporthe oryzae MGG_00329 N 0.000
PV04_01229 Capronia semiimmersa PV04_01229 N 0.000
PV05_11230 Exophiala xenobiotica PV05_11230 N 0.000
PV06_03710 Exophiala oligosperma PV06_03710 N 0.000
PV07_02041 Cladophialophora immunda PV07_02041 N 0.000
PV10_07888 Exophiala mesophila PV10_07888 N 0.000
PV11_08310 Exophiala sideris PV11_08310 N 0.000
Z518_04103 Rhinocladiella mackenziei Z518_04103 N 0.000
Z519_09135 Cladophialophora bantiana Z519_09135 N 0.000