Ppa-irx-1 (Pristionchus pacificus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PPA16597 T222632_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.820 0.855
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.778 0.855
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.778 0.855
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.778 0.855
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.776 0.836
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.770 0.818
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.770 0.818
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.770 0.818
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.769 0.818
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.769 0.818
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.769 0.818
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.769 0.818
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.769 0.818
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.769 0.818
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA16597 Homeodomain 38 95

Links

Other Homeodomain family TFs
Other Pristionchus pacificus TFs

384 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004174 Aedes aegypti AAEL004174 I
AAEL013504 Aedes aegypti AAEL013504 I
AALB004781 Anopheles albimanus AALB004781 I
AARA007626 Anopheles arabiensis AARA007626 I
AATE019626 Anopheles atroparvus AATE019626 I
ACHR005948 Anopheles christyi ACHR005948 I
ACOM024997 Anopheles coluzzii ACOM024997 I
ACUA013605 Anopheles culicifacies ACUA013605 I
ADAC005019 Anopheles darlingi ADAC005019 I
ADIR008855 Anopheles dirus ADIR008855 I
AEPI008783 Anopheles epiroticus AEPI008783 I
AFAF003219 Anopheles farauti AFAF003219 I
AFUN010103 Anopheles funestus AFUN010103 I
AGAP005895 Anopheles gambiae AGAP005895 I
AGAP005896 Anopheles gambiae AGAP005896 I
AMEC016175 Anopheles melas AMEC016175 I
AMEM015129 Anopheles merus AMEM015129 I
AMIN011562 Anopheles minimus AMIN011562 I
AQUA010990 Anopheles quadriannulatus AQUA010990 I
ASIS012852 Anopheles sinensis ASIS012852 I
ASTEI02809 Anopheles stephensi ASTEI02809 I
CPIJ004922 Culex quinquefasciatus CPIJ004922 I
CpipJ_CPIJ004922 Culex pipiens CpipJ_CPIJ004922 I
Doc1 Drosophila melanogaster FBgn0028789 I
Doc2 Drosophila melanogaster FBgn0035956 D
Doc3 Drosophila melanogaster FBgn0035954 D
ENSGMOG00000002896 Gadus morhua ENSGMOG00000002896 I
ENSONIG00000010454 Oreochromis niloticus ENSONIG00000010454 I
ENSPFOG00000016384 Poecilia formosa ENSPFOG00000016384 I
ENSXMAG00000005715 Xiphophorus maculatus ENSXMAG00000005715 I
GA18655 Drosophila pseudoobscura FBgn0078655 I
GA18682 Drosophila pseudoobscura FBgn0078682 I
GA18721 Drosophila pseudoobscura FBgn0078721 I
GD14148 Drosophila simulans FBgn0185836 I
GD14149 Drosophila simulans FBgn0185837 I
GE20799 Drosophila yakuba FBgn0238093 I
GE21264 Drosophila yakuba FBgn0238533 I
GF10130 Drosophila ananassae FBgn0087171 I
GF24374 Drosophila ananassae FBgn0101368 I
GF24375 Drosophila ananassae FBgn0101369 I
GG14368 Drosophila erecta FBgn0106627 I
GG14369 Drosophila erecta FBgn0106628 I
GG15041 Drosophila erecta FBgn0107295 I
GH14955 Drosophila grimshawi FBgn0122430 I
GH16540 Drosophila grimshawi FBgn0124011 I
GH16541 Drosophila grimshawi FBgn0124012 I
GI11482 Drosophila mojavensis FBgn0134242 I
GI13829 Drosophila mojavensis FBgn0136583 I
GI13831 Drosophila mojavensis FBgn0136585 I
GJ11695 Drosophila virilis FBgn0198949 I
GJ11697 Drosophila virilis FBgn0198951 I
GK12279 Drosophila willistoni FBgn0214289 I
GK12352 Drosophila willistoni FBgn0214362 I
GK12353 Drosophila willistoni FBgn0214363 I
GL15033 Drosophila persimilis FBgn0152637 I
GL15034 Drosophila persimilis FBgn0152638 I
GL15081 Drosophila persimilis FBgn0152685 I
GM24895 Drosophila sechellia FBgn0179757 I
GM25112 Drosophila sechellia FBgn0179973 I
GM25113 Drosophila sechellia FBgn0179974 I
LCUP005945 Lucilia cuprina LCUP005945 I
LCUP005946 Lucilia cuprina LCUP005946 I
LCUP005947 Lucilia cuprina LCUP005947 I
MDOA003812 Musca domestica MDOA003812 I
MDOA006037 Musca domestica MDOA006037 I
MDOA015287 Musca domestica MDOA015287 I
MESCA005219 Megaselia scalaris MESCA005219 I
TBX2 Takifugu rubripes ENSTRUG00000008297 D
TBX2 Oryzias latipes ENSORLG00000014792 I
TBX2 Gasterosteus aculeatus ENSGACG00000013575 D