RHTO_02593 (Rhodosporidium toruloides)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 RHTO_02593 T222840_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CAD26261
M02055_2.00 		Encephalitozoon cuniculi
NNYAATWWA
TWWATTRNN		 PBM
Weirauch et al.(2014)
pTH6363 		0.680 0.491
NEMVEDRAFT_v1g105595
M02143_2.00 		Nematostella vectensis
NTWATWRN
NYWATWAN		 PBM
Weirauch et al.(2014)
pTH5503 		0.676 0.474
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.602 0.368
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.602 0.368
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.602 0.368
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.602 0.368
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.602 0.368
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.602 0.368
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.602 0.368
hbx10
M02074_2.00 		Dictyostelium discoideum
NYAATWWN
NWWATTRN		 PBM
Weirauch et al.(2014)
pTH5547 		0.601 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMS20645 Homeodomain 126 182

Links

Other Homeodomain family TFs
Other Rhodosporidium toruloides TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_192725 Agaricus bisporus AGABI2DRAFT_192725 I 0.000
BOTBODRAFT_214576 Botryobasidium botryosum BOTBODRAFT_214576 I 0.631
CAD26261 Encephalitozoon cuniculi CAD26261 D 0.680
CC1G_01962 Coprinopsis cinerea CC1G_01962 I 0.679
CERSUDRAFT_94820 Ceriporiopsis subvermispora CERSUDRAFT_94820 I 0.000
CNJ00280 Cryptococcus neoformans CNJ00280 I 0.000
CY34DRAFT_106181 Suillus luteus CY34DRAFT_106181 I 0.667
CY34DRAFT_109842 Suillus luteus CY34DRAFT_109842 I 0.616
E5Q_01806 Mixia osmundae E5Q_01806 I 0.792
E5Q_03771 Mixia osmundae E5Q_03771 I 0.000
EDEG_01594 Edhazardia aedis EDEG_01594 I 0.000
EFA86584.1 Polysphondylium pallidum EFA86584.1 I 0.698
EHEL_031090 Encephalitozoon hellem EHEL_031090 I 0.680
Eint_031070 Encephalitozoon intestinalis Eint_031070 I 0.668
EROM_031050 Encephalitozoon romaleae EROM_031050 I 0.680
estExt_fgenesh1_pg.C_10219 Sporobolomyces roseus estExt_fgenesh1_pg.C_10219 I 0.000
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I 0.697
e_gw1.10.235.1 Phycomyces blakesleeanus e_gw1.10.235.1 I 0.000
fgenesh1_pg.C_scaffold_15000074 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_15000074 I 0.659
fgeneshMC_pg.1_#_125 Mucor circinelloides fgeneshMC_pg.1_#_125 I 0.774
fgeneshMC_pg.1_#_1591 Mucor circinelloides fgeneshMC_pg.1_#_1591 I 0.662
fgeneshMC_pg.1_#_69 Mucor circinelloides fgeneshMC_pg.1_#_69 I 0.730
fgeneshMC_pg.2_#_8 Mucor circinelloides fgeneshMC_pg.2_#_8 I 0.000
fgeneshMC_pg.4_#_986 Mucor circinelloides fgeneshMC_pg.4_#_986 I 0.661
fgeneshMC_pg.7_#_205 Mucor circinelloides fgeneshMC_pg.7_#_205 N 0.000
fgeneshMC_pg.7_#_41 Mucor circinelloides fgeneshMC_pg.7_#_41 I 0.000
fgeneshPB_pg.11__229 Phycomyces blakesleeanus fgeneshPB_pg.11__229 N 0.000
fgeneshPB_pg.18__155 Phycomyces blakesleeanus fgeneshPB_pg.18__155 I 0.657
fgeneshPB_pg.6__195 Phycomyces blakesleeanus fgeneshPB_pg.6__195 I 0.710
FOMPIDRAFT_1128018 Fomitopsis pinicola FOMPIDRAFT_1128018 I 0.603
GALMADRAFT_211191 Galerina marginata GALMADRAFT_211191 I 0.679
GLOINDRAFT_21145 Rhizophagus irregularis GLOINDRAFT_21145 I 0.723
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I 0.000
GLOINDRAFT_43985 Rhizophagus irregularis GLOINDRAFT_43985 I 0.000
GLOTRDRAFT_92391 Gloeophyllum trabeum GLOTRDRAFT_92391 I 0.000
H311_05138 Anncaliia algerae H311_05138 I 0.670
J056_004115 Wallemia ichthyophaga J056_004115 I 0.643
JAAARDRAFT_47621 Jaapia argillacea JAAARDRAFT_47621 I 0.680
K443DRAFT_127593 Laccaria amethystina K443DRAFT_127593 I 0.679
KNAG_0A05600 Kazachstania naganishii KNAG_0A05600 I 0.681
L804_00025 Cryptococcus gattii L804_00025 I 0.000
LACBIDRAFT_293988 Laccaria bicolor LACBIDRAFT_293988 I 0.679
M378DRAFT_8263 Amanita muscaria M378DRAFT_8263 I 0.667
M404DRAFT_74218 Pisolithus tinctorius M404DRAFT_74218 I 0.000
M407DRAFT_11655 Tulasnella calospora M407DRAFT_11655 I 0.688
M407DRAFT_4599 Tulasnella calospora M407DRAFT_4599 I 0.671
M413DRAFT_413744 Hebeloma cylindrosporum M413DRAFT_413744 I 0.667
M896_030550 Ordospora colligata M896_030550 I 0.680
MELLADRAFT_35504 Melampsora laricipopulina MELLADRAFT_35504 I 0.000
Moror_6758 Moniliophthora roreri Moror_6758 I 0.679
MVLG_00113 Microbotryum violaceum MVLG_00113 I 0.744
MVLG_02963 Microbotryum violaceum MVLG_02963 I 0.000
NAPIS_ORF00184 Nosema apis NAPIS_ORF00184 I 0.694
NAPIS_ORF00325 Nosema apis NAPIS_ORF00325 I 0.696
NBO_11g0012 Nosema bombycis NBO_11g0012 I 0.672
NBO_6g0031 Nosema bombycis NBO_6g0031 I 0.714
NBO_85g0005 Nosema bombycis NBO_85g0005 I 0.672
NCAS_0B05980 Naumovozyma castellii NCAS_0B05980 I 0.652
NCER_100211 Nosema ceranae NCER_100211 I 0.695
NCER_100315 Nosema ceranae NCER_100315 I 0.696
NDAI_0B03290 Naumovozyma dairenensis NDAI_0B03290 I 0.647
NEMVEDRAFT_v1g105595 Nematostella vectensis NEMVEDRAFT_v1g105595 D 0.676
NEPG_01845 Nematocida parisii ertm1 NEPG_01845 I 0.673
NERG_00880 Nematocida sp NERG_00880 I 0.673
PAXRUDRAFT_10369 Paxillus rubicundulus PAXRUDRAFT_10369 I 0.679
PFL1_02807 Pseudozyma flocculosa PFL1_02807 I 0.000
PFL1_03213 Pseudozyma flocculosa PFL1_03213 I 0.000
PGTG_00338 Puccinia graminis PGTG_00338 I 0.812
PHACADRAFT_257545 Phanerochaete carnosa PHACADRAFT_257545 I 0.661
PHLGIDRAFT_55548 Phlebiopsis gigantea PHLGIDRAFT_55548 I 0.661
PHSY_003535 Pseudozyma hubeiensis PHSY_003535 I 0.000
PIIN_02203 Piriformospora indica PIIN_02203 I 0.679
PILCRDRAFT_110903 Piloderma croceum PILCRDRAFT_110903 I 0.000
PISMIDRAFT_65337 Pisolithus microcarpus PISMIDRAFT_65337 I 0.000
PLEOSDRAFT_173849 Pleurotus ostreatus PLEOSDRAFT_173849 I 0.683
POSPLDRAFT_98870 Postia placenta POSPLDRAFT_98870 I 0.663
PTTG_03012 Puccinia triticina PTTG_03012 I 0.000
PTTG_07330 Puccinia triticina PTTG_07330 I 0.812
RHTO_06229 Rhodosporidium toruloides RHTO_06229 I 0.000
RO3G_02291 Rhizopus oryzae RO3G_02291 I 0.781
RO3G_03200 Rhizopus oryzae RO3G_03200 I 0.634
RO3G_11930 Rhizopus oryzae RO3G_11930 I 0.000
RO3G_13360 Rhizopus oryzae RO3G_13360 I 0.000
RTG_01934 Rhodotorula glutinis RTG_01934 I 0.000
Scas_Contig613.11 Saccharomyces castellii Scas_Contig613.11 I 0.652
SCHCODRAFT_257987 Schizophyllum commune SCHCODRAFT_257987 I 0.000
SCLCIDRAFT_97512 Scleroderma citrinum SCLCIDRAFT_97512 I 0.000
SERLA73DRAFT_72643 Serpula lacrymans SERLA73DRAFT_72643 I 0.679
SPPG_05107 Spizellomyces punctatus SPPG_05107 I 0.759
sr15806 Sporisorium reilianum sr15806 I 0.000
THOM_0497 Trachipleistophora hominis THOM_0497 I 0.680
UHOR_07039 Ustilago hordei UHOR_07039 I 0.000
UM04928 Ustilago maydis UM04928 D 0.000
V565_070630 Rhizoctonia solani V565_070630 I 0.000
VCUG_00708 Vavraia culicis VCUG_00708 I 0.680
WALSEDRAFT_59197 Wallemia sebi WALSEDRAFT_59197 I 0.648
warA Dictyostelium discoideum DDB_G0291075 I 0.697
YALI0_F16852g Yarrowia lipolytica YALI0_F16852g I 0.650