CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Sb02g027300 *(Sorghum bicolor)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Sb02g027300	T222960_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.851	0.875
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.827	0.768
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.827	0.768
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.813	0.821
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.813	0.821
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.813	0.821
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.813	0.821
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.813	0.821
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.813	0.821
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.813	0.821
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.813	0.804
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.796	0.786
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.796	0.786
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.796	0.786
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.796	0.786
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.756	0.732
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.756	0.732
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.754	0.696
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.754	0.696
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.749	0.643
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.749	0.643
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.689	0.768
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.689	0.768
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.669	0.750
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.669	0.750
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Sb02g027300.1	Homeodomain	50	105	EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Sorghum bicolor* TFs

816 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BBA_06158	Beauveria bassiana	BBA_06158	N	0.000
CCM_08431	Cordyceps militaris	CCM_08431	N	0.000
CFIO01_12131	Colletotrichum fioriniae	CFIO01_12131	N	0.000
CGGC5_4581	Colletotrichum gloeosporioides	CGGC5_4581	N	0.000
CH063_08290	Colletotrichum higginsianum	CH063_08290	N	0.000
Cob_11006	Colletotrichum orbiculare	Cob_11006	N	0.000
CPUR_03067	Claviceps purpurea	CPUR_03067	N	0.000
CSUB01_03246	Colletotrichum sublineola	CSUB01_03246	N	0.000
FFUJ_07433	Fusarium fujikuroi	FFUJ_07433	N	0.000
fgenesh1_pg.sca_5_chr5_3_0000045	Nectria haematococca	fgenesh1_pg.sca_5_chr5_3_0000045	N	0.000
FGRRES_17302	Fusarium graminearum	FGRRES_17302	N	0.000
FOXG_05391	Fusarium oxysporum	FOXG_05391	N	0.000
FPSE_03918	Fusarium pseudograminearum	FPSE_03918	N	0.000
FVEG_02737	Fusarium verticillioides	FVEG_02737	N	0.000
GLRG_03524	Colletotrichum graminicola	GLRG_03524	N	0.000
MAC_06906	Metarhizium acridum	MAC_06906	N	0.000
MAJ_07028	Metarhizium majus	MAJ_07028	N	0.000
MANI_011101	Metarhizium anisopliae	MANI_011101	N	0.000
MBR_08437	Metarhizium brunneum	MBR_08437	N	0.000
MGU_07007	Metarhizium guizhouense	MGU_07007	N	0.000
NechaG80246	Fusarium solani	NechaG80246	N	0.000
TRIATDRAFT_292891	Trichoderma atroviride	TRIATDRAFT_292891	N	0.000
TRIREDRAFT_67209	Trichoderma reesei	TRIREDRAFT_67209	N	0.000
TRIVIDRAFT_211762	Trichoderma virens	TRIVIDRAFT_211762	N	0.000
VDAG_01498	Verticillium dahliae	VDAG_01498	N	0.000
VDBG_04268	Verticillium alfalfae	VDBG_04268	N	0.000
VHEMI08725	Torrubiella hemipterigena	VHEMI08725	N	0.000
X797_008065	Metarhizium robertsii	X797_008065	N	0.000

Sb02g027300 (Sorghum bicolor) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

816 Related TFs

Sb02g027300 **(Sorghum bicolor)
Homeodomain**