Smp_161270 (Schistosoma mansoni)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Smp_161270 T223505_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.820 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.820 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.820 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.820 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.820 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.820 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.820 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.820 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.820 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.718 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.718 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.718 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Smp_161270.1:pep Homeodomain 507 552

Links

Other Homeodomain family TFs
Other Schistosoma mansoni TFs

1248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtGRF1 Arabidopsis lyrata fgenesh2_kg.4__207__AT2G22840.1 N 0.000
AtGRF2 Arabidopsis lyrata Al_scaffold_0007_269 N 0.000
Bo3g042310 Brassica oleracea Bo3g042310 N 0.000
Bostr.19427s0054 Boechera stricta Bostr.19427s0054 N 0.000
Bostr.7867s1635 Boechera stricta Bostr.7867s1635 N 0.000
Bra000575 Brassica rapa Bra000575 N 0.000
Cagra.4290s0006 Capsella grandiflora Cagra.4290s0006 N 0.000
Cagra.9757s0010 Capsella grandiflora Cagra.9757s0010 N 0.000
Carubv10004544m.g Capsella rubella Carubv10004544m.g N 0.000
Carubv10022975m.g Capsella rubella Carubv10022975m.g N 0.000
gene02620-v1.0-hybrid Fragaria vesca gene02620-v1.0-hybrid N 0.000
Gorai.008G265600 Gossypium raimondii Gorai.008G265600 N 0.000
GRF1 Arabidopsis thaliana AT2G22840 N 0.000
GRF2 Arabidopsis thaliana AT4G37740 N 0.000
Pm005437 Prunus mume Pm005437 N 0.000
PRUPE_ppa019623mg Prunus persica PRUPE_ppa019623mg N 0.000
SapurV1A.0611s0190 Salix purpurea SapurV1A.0611s0190 N 0.000
Thhalv10000124m.g Eutrema salsugineum Thhalv10000124m.g N 0.000
Thhalv10024915m.g Eutrema salsugineum Thhalv10024915m.g N 0.000