Alligator_sinensis_CCG001365.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG001365.1 T225154_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.751 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.751 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.751 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.751 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.751 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.751 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.751 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.751 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001365.1 Homeodomain 61 106

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

1227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N
Ca_16375 Cicer arietinum Ca_16375 N
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N
PGSC0003DMG400025780 Solanum tuberosum PGSC0003DMG400025780 N
PGSC0003DMG400025782 Solanum tuberosum PGSC0003DMG400025782 N
PGSC0003DMG400025783 Solanum tuberosum PGSC0003DMG400025783 N
Pm021290 Prunus mume Pm021290 N
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N
RGE1 Populus trichocarpa POPTR_0001s31250 N
RGE1 Vitis vinifera VIT_03s0063g00170 N
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N
Solyc01g057300.1 Solanum lycopersicum Solyc01g057300.1 N
Solyc01g107950.1 Solanum lycopersicum Solyc01g107950.1 N
Solyc01g107960.2 Solanum lycopersicum Solyc01g107960.2 N
TCM_007083 Theobroma cacao TCM_007083 N
TCM_033803 Theobroma cacao TCM_033803 N
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N