Cla018935 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla018935 T225621_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.867 0.930
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.850 0.895
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.850 0.895
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.841 0.754
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.841 0.754
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.829 0.737
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.829 0.737
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.822 0.772
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.822 0.772
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.806 0.772
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.806 0.772
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.806 0.772
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.801 0.684
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.764 0.684
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.764 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018935 Homeodomain 20 77

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011241 Ailuropoda melanoleuca ENSAMEG00000011241 N
ENSCJAG00000015664 Callithrix jacchus ENSCJAG00000015664 I
ENSCSAG00000017830 Chlorocebus sabaeus ENSCSAG00000017830 N
ENSMMUP00000018505 Macaca fascicularis ENSMMUP00000018505 N
ENSMPUG00000010896 Mustela putorius furo ENSMPUG00000010896 N
ENSNLEG00000011354 Nomascus leucogenys ENSNLEG00000011354 N
ENSOARG00000017953 Ovis aries ENSOARG00000017953 N
ENSOCUG00000015340 Oryctolagus cuniculus ENSOCUG00000015340 N
ENSPPYG00000017395 Pongo abelii ENSPPYG00000017395 N
ENSSSCG00000009866 Sus scrofa ENSSSCG00000009866 N
ENSSSCG00000021941 Sus scrofa ENSSSCG00000021941 N
ENSSTOG00000021741 Ictidomys tridecemlineatus ENSSTOG00000021741 N
ENSTBEG00000016819 Tupaia belangeri ENSTBEG00000016819 N
ENSTSYG00000006410 Tarsius syrichta ENSTSYG00000006410 N
Myotis_brandtii_Zscan21_10002830 Myotis brandtii Myotis_brandtii_Zscan21_10002830 N
ZSCAN21 Homo sapiens ENSG00000166529 N
ZSCAN21 Bos taurus ENSBTAG00000030956 N
ZSCAN21 Canis familiaris ENSCAFG00000028916 N
ZSCAN21 Vicugna pacos ENSVPAG00000004514 N
ZSCAN21 Tursiops truncatus ENSTTRG00000012309 N
ZSCAN21 Cavia porcellus ENSCPOG00000015351 N
Zscan21 Dipodomys ordii ENSDORG00000009833 N
ZSCAN21 Tupaia belangeri ENSTBEG00000012971 N
ZSCAN21 Equus caballus ENSECAG00000024642 N
ZSCAN21 Felis catus ENSFCAG00000029089 N
Zscan21 Mus musculus ENSMUSG00000037017 N
Zscan21 Rattus norvegicus ENSRNOG00000039234 N
ZSCAN21 Pteropus vampyrus ENSPVAG00000005181 N
ZSCAN21 Pan troglodytes ENSPTRG00000019469 N
ZSCAN21 Gorilla gorilla ENSGGOG00000011448 N
ZSCAN21 Procavia capensis ENSPCAG00000005227 N
ZSCAN21 Otolemur garnettii ENSOGAG00000016311 N
ZSCAN21 Microcebus murinus ENSMICG00000003959 N
ZSCAN21 Macaca mulatta ENSMMUG00000014082 N