Hsal_11140--XP_001120088.1_APIME (Harpegnathos saltator)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Hsal_11140--XP_001120088.1_APIME T226306_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.759 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.759 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.759 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.759 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.759 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.759 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.759 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.759 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.759 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.744 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.744 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.744 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hsal_11140--XP_001120088.1_APIME Homeodomain 77 122

Links

Other Homeodomain family TFs
Other Harpegnathos saltator TFs

1236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA017399 Oryza indica BGIOSGA017399 N 0.000
BGIOSGA034884 Oryza indica BGIOSGA034884 N 0.000
OGLUM04G30490 Oryza glumaepatula OGLUM04G30490 N 0.000
OGLUM11G04100 Oryza glumaepatula OGLUM11G04100 N 0.000
OLONG_022931 Oryza longistaminata OLONG_022931 N 0.000
OMERI04G25800 Oryza meridionalis OMERI04G25800 N 0.000
OMERI11G03850 Oryza meridionalis OMERI11G03850 N 0.000
ONIVA04G29800 Oryza nivara ONIVA04G29800 N 0.000
ONIVA11G04380 Oryza nivara ONIVA11G04380 N 0.000
OPUNC04G28140 Oryza punctata OPUNC04G28140 N 0.000
ORGLA04G0269500 Oryza glaberrima ORGLA04G0269500 N 0.000
ORGLA11G0041200 Oryza glaberrima ORGLA11G0041200 N 0.000
ORUFI04G32320 Oryza rufipogon ORUFI04G32320 N 0.000
ORUFI11G04240 Oryza rufipogon ORUFI11G04240 N 0.000
OS04G0690100 Oryza sativa OS04G0690100 N 0.000
OS11G0169400 Oryza sativa OS11G0169400 N 0.000