CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Myotis_brandtii_RX1_10024726 *(Myotis brandtii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Myotis_brandtii_RX1_10024726	T226441_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Obox6 M00490_2.00	Mus musculus	NTAATCYNN	NNRGATTAN	PBM Berger et al.(2008) Obox6_3440	0.659	0.404
ceh-53 M00679_2.00	Caenorhabditis elegans	HTAATCYN	NRGATTAD	PBM Narasimhan et al.(2015) pTH10699	0.646	0.439
ceh-37 M00674_2.00	Caenorhabditis elegans	HTAATCYN	NRGATTAD	PBM Narasimhan et al.(2015) pTH10716	0.639	0.404
Dmbx1 M00441_2.00	Mus musculus	NTAATCYNN	NNRGATTAN	PBM Berger et al.(2008) Dmbx1_2277	0.638	0.404
DMBX1 M03236_2.00	Homo sapiens	NHTAATCCBN	NVGGATTADN	SELEX Jolma et al.(2013) DMBX1_1	0.638	0.404
DMBX1 M05383_2.00	Homo sapiens	NTAATCSN	NSGATTAN	SELEX Yin et al.(2017) DMBX1_eDBD_HT-SELEX	0.638	0.404
DMBX1 M05384_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) DMBX1_eDBD_Methyl-HT-SELEX	0.638	0.404
NEMVEDRAFT_v1g113057 M02144_2.00	Nematostella vectensis	NYTAATCCBN	NVGGATTARN	PBM Weirauch et al.(2014) pTH6135	0.636	0.351
CRX M00274_2.00	Homo sapiens	NMTAATCCSN	NSGGATTAKN	PBM Barrera et al.(2016) CRX_REF	0.633	0.386
Otx1 M00396_2.00	Mus musculus	NTAAKCYN	NRGMTTAN	PBM Berger et al.(2008) Otx1_2325	0.633	0.386
Otx2 M00418_2.00	Mus musculus	NTAAKMBN	NVKMTTAN	PBM Berger et al.(2008) Otx2_3441	0.633	0.386
Crx M00489_2.00	Mus musculus	NWAAKMBN	NVKMTTWN	PBM Berger et al.(2008) Crx_3485	0.633	0.386
OTX1 M03116_2.00	Homo sapiens	NNTAAKCGGATTANN	NNTAATCCGMTTANN	SELEX Jolma et al.(2013) OTX1_1	0.633	0.386
OTX1 M03117_2.00	Homo sapiens	NTAATCSB	VSGATTAN	SELEX Jolma et al.(2013) OTX1_2	0.633	0.386
OTX2 M03197_2.00	Homo sapiens	NHTAAKCGGATTANN	NNTAATCCGMTTADN	SELEX Jolma et al.(2013) OTX2_1	0.633	0.386
OTX2 M03198_2.00	Homo sapiens	HTAATCCB	VGGATTAD	SELEX Jolma et al.(2013) OTX2_2	0.633	0.386
Otx1 M03249_2.00	Mus musculus	NNTAAKCGGATTANN	NNTAATCCGMTTANN	SELEX Jolma et al.(2013) Otx1_1	0.633	0.386
Otx1 M03250_2.00	Mus musculus	NTAATCCN	NGGATTAN	SELEX Jolma et al.(2013) Otx1_2	0.633	0.386
oc M03808_2.00	Drosophila melanogaster	HTAATCCB	VGGATTAD	SELEX Nitta et al.(2015) oc_1	0.633	0.386
CRX M04949_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) CRX_FL_HT-SELEX	0.633	0.386
OTX1 M05022_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX1_eDBD_HT-SELEX	0.633	0.386
OTX1 M05024_2.00	Homo sapiens	NTAATCCNNN	NNNGGATTAN	SELEX Yin et al.(2017) OTX1_FL_HT-SELEX	0.633	0.386
OTX2 M05251_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX2_FL_HT-SELEX	0.633	0.386
oc M06502_2.00	Drosophila melanogaster	TAATCC	GGATTA	B1H Mathelier et al.(2014) MA0234.1	0.633	0.386
oc M06282_2.00	Drosophila melanogaster	WTAATCC	GGATTAW	B1H Zhu et al.(2011) Oc_Cell_FBgn0004102	0.633	0.386
oc M06283_2.00	Drosophila melanogaster	NTAATCCB	VGGATTAN	B1H Zhu et al.(2011) Oc_SOLEXA_FBgn0004102	0.633	0.386
Crx M08139_2.00	Mus musculus	YTAATCCYCYY	RRGRGGATTAR	ChIP-seq Mathelier et al.(2014) MA0467.1	0.633	0.386
CRX M09132_2.00	Homo sapiens	BYTAATCCBHYYN	NRRDVGGATTARV	Misc Kulakovskiy et al.(2013) CRX_HUMAN.H11MO.0.B	0.633	0.386
OTX2 M09153_2.00	Homo sapiens	BYTAATCCYYN	NRRGGATTARV	Misc Kulakovskiy et al.(2013) OTX2_HUMAN.H11MO.0.A	0.633	0.386
Crx M09208_2.00	Mus musculus	BYTAATCCBHYYN	NRRDVGGATTARV	Misc Kulakovskiy et al.(2013) CRX_MOUSE.H11MO.0.A	0.633	0.386
Otx2 M09183_2.00	Mus musculus	HTAATCCYNYNN	NNRNRGGATTAD	Misc Kulakovskiy et al.(2013) OTX2_MOUSE.H11MO.0.A	0.633	0.386
Crx M09577_2.00	Mus musculus	NYTAATCC	GGATTARN	Misc Heinz et al.(2010) Retina-Crx_GSE20012	0.633	0.386
Otx2 M09569_2.00	Mus musculus	NHTAATCCHB	VDGGATTADN	Misc Heinz et al.(2010) EpiLC-Otx2_GSE56098	0.633	0.386
oc M09681_2.00	Drosophila melanogaster	HTAATCCN	NGGATTAD	Misc Kulakovskiy et al.(2009) oc	0.633	0.386
CRX M10647_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CRX_Q4_01	0.633	0.386
CRX M10648_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CRX_Q4_02	0.633	0.386
OTX1 M10673_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX1_Q5	0.633	0.386
OTX2 M10727_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX2_Q3_01	0.633	0.386
OTX2 M10728_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OTX2_Q3	0.633	0.386
CRX M00271_2.00	Homo sapiens	NHDAKNN	NNMTHDN	PBM Barrera et al.(2016) CRX_R41Q	0.633	0.386
CRX M00272_2.00	Homo sapiens	NNHNATNN	NNATNDNN	PBM Barrera et al.(2016) CRX_R41W	0.633	0.386
CRX M00273_2.00	Homo sapiens	NNYTAATCCVN	NBGGATTARNN	PBM Barrera et al.(2016) CRX_R90W	0.633	0.386
CRX M00275_2.00	Homo sapiens	NMTAATCCSN	NSGGATTAKN	PBM Barrera et al.(2016) CRX_V66I	0.633	0.386
CRX M04950_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) CRX_FL_Methyl-HT-SELEX	0.633	0.386
OTX1 M05023_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX1_eDBD_Methyl-HT-SELEX	0.633	0.386
OTX1 M05025_2.00	Homo sapiens	HTAATCCNHN	NDNGGATTAD	SELEX Yin et al.(2017) OTX1_FL_Methyl-HT-SELEX	0.633	0.386
OTX2 M05252_2.00	Homo sapiens	NTAATCCN	NGGATTAN	SELEX Yin et al.(2017) OTX2_FL_Methyl-HT-SELEX	0.633	0.386
HBX4_ECHGR M02195_2.00	Echinococcus granulosus	NHTAATCYNN	NNRGATTADN	PBM Weirauch et al.(2014) pTH6301	0.631	0.386
ceh-36 M00673_2.00	Caenorhabditis elegans	NWAATCYN	NRGATTWN	PBM Narasimhan et al.(2015) pTH10730	0.629	0.421
Gsc M00411_2.00	Mus musculus	NNTAATYBN	NVRATTANN	PBM Berger et al.(2008) Gsc_2327	0.626	0.404
GSC M03146_2.00	Homo sapiens	NHTAATCCNH	DNGGATTADN	SELEX Jolma et al.(2013) GSC_1	0.626	0.404
GSC M05134_2.00	Homo sapiens	NTAATCCB	VGGATTAN	SELEX Yin et al.(2017) GSC_eDBD_HT-SELEX	0.626	0.404
GSC M05136_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) GSC_FL_HT-SELEX	0.626	0.404
gsc M09584_2.00	Xenopus tropicalis	NTAATCYN	NRGATTAN	Misc Heinz et al.(2010) FrogEmbryos-GSC_DRA000576	0.626	0.404
GSC M05135_2.00	Homo sapiens	HTAATCCB	VGGATTAD	SELEX Yin et al.(2017) GSC_eDBD_Methyl-HT-SELEX	0.626	0.404
GSC M05137_2.00	Homo sapiens	HTAATCCN	NGGATTAD	SELEX Yin et al.(2017) GSC_FL_Methyl-HT-SELEX	0.626	0.404
Obox3 M00523_2.00	Mus musculus	NWWATMN	NKATWWN	PBM Berger et al.(2008) Obox3_3439	0.613	0.386
Obox1 M00515_2.00	Mus musculus	NTAATCYNNN	NNNRGATTAN	PBM Berger et al.(2008) Obox1_3970	0.613	0.368
Obox5 M00527_2.00	Mus musculus	NTWATHNN	NNDATWAN	PBM Berger et al.(2008) Obox5_2284	0.613	0.368
Obox5 M00528_2.00	Mus musculus	NWDATHNN	NNDATHWN	PBM Berger et al.(2008) Obox5_3963	0.613	0.368
CRX M00270_2.00	Homo sapiens	NWDAKNN	NNMTHWN	PBM Barrera et al.(2016) CRX_E80A	0.612	0.368
Gsc M02120_2.00	Drosophila melanogaster	NTAATCYN	NRGATTAN	PBM Weirauch et al.(2014) pTH5511	0.609	0.421
Gsc M03817_2.00	Drosophila melanogaster	TAATCCB	VGGATTA	SELEX Nitta et al.(2015) Gsc_1	0.609	0.421
Gsc M03818_2.00	Drosophila melanogaster	TAATCGGATTA	TAATCCGATTA	SELEX Nitta et al.(2015) Gsc_2	0.609	0.421
Gsc M03819_2.00	Drosophila melanogaster	TAATCYNHTAATCBN	NVGATTADNRGATTA	SELEX Nitta et al.(2015) Gsc_3	0.609	0.421
Gsc M03820_2.00	Drosophila melanogaster	TAATCGGATTA	TAATCCGATTA	SELEX Nitta et al.(2015) Gsc_4	0.609	0.421
Gsc M03821_2.00	Drosophila melanogaster	TAATCYNWTWATCYB	VRGATWAWNRGATTA	SELEX Nitta et al.(2015) Gsc_5	0.609	0.421
Gsc M05873_2.00	Drosophila melanogaster	TAATCSNHTWA	TWADNSGATTA	SMiLE-seq Isakova et al.(2017) Gsc	0.609	0.421
Gsc M06509_2.00	Drosophila melanogaster	TAATCY	RGATTA	B1H Mathelier et al.(2014) MA0190.1	0.609	0.421
Gsc M06297_2.00	Drosophila melanogaster	VNTAATCY	RGATTANB	B1H Zhu et al.(2011) Gsc_Cell_FBgn0010323	0.609	0.421
Gsc M06298_2.00	Drosophila melanogaster	NTAATCY	RGATTAN	B1H Zhu et al.(2011) Gsc_SOLEXA_FBgn0010323	0.609	0.421
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Myotis_brandtii_RX1_10024726	Homeodomain	21	77	RPKRTVYSIEQRPQLEEFYKKKCYGTYKERETLAKQVNVQEHQVQVWLKNLRAKDYR

Links
Other Homeodomain family TFs
Other *Myotis brandtii* TFs

757 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1Q1_01006	Trichosporon asahii	A1Q1_01006	N	0.000
BN946_scf185014.g25	Trametes cinnabarina	BN946_scf185014.g25	N	0.000
BOTBODRAFT_155106	Botryobasidium botryosum	BOTBODRAFT_155106	N	0.000
CC1G_01048	Coprinopsis cinerea	CC1G_01048	N	0.000
CERSUDRAFT_82708	Ceriporiopsis subvermispora	CERSUDRAFT_82708	N	0.000
CY34DRAFT_800522	Suillus luteus	CY34DRAFT_800522	N	0.000
DACRYDRAFT_20007	Dacryopinax sp	DACRYDRAFT_20007	N	0.000
E5Q_03246	Mixia osmundae	E5Q_03246	N	0.000
estExt_Genewise1.C_20637	Heterobasidion annosum	estExt_Genewise1.C_20637	N	0.000
e_gw1.15.51.1	Tremella mesenterica	e_gw1.15.51.1	N	0.000
fgenesh1_pg.C_scaffold_1000144	Phanerochaete chrysosporium	fgenesh1_pg.C_scaffold_1000144	N	0.000
FIBRA_08487	Fibroporia radiculosa	FIBRA_08487	N	0.000
GALMADRAFT_269832	Galerina marginata	GALMADRAFT_269832	N	0.000
GLOTRDRAFT_136812	Gloeophyllum trabeum	GLOTRDRAFT_136812	N	0.000
GYMLUDRAFT_75242	Gymnopus luxurians	GYMLUDRAFT_75242	N	0.000
HETIRDRAFT_432523	Heterobasidion irregulare	HETIRDRAFT_432523	N	0.000
JAAARDRAFT_31927	Jaapia argillacea	JAAARDRAFT_31927	N	0.000
K437DRAFT_69739	Tilletiaria anomala	K437DRAFT_69739	N	0.000
LACBIDRAFT_305811	Laccaria bicolor	LACBIDRAFT_305811	N	0.000
M378DRAFT_187599	Amanita muscaria	M378DRAFT_187599	N	0.000
M404DRAFT_992985	Pisolithus tinctorius	M404DRAFT_992985	N	0.000
M408DRAFT_197963	Serendipita vermifera	M408DRAFT_197963	N	0.000
M413DRAFT_15049	Hebeloma cylindrosporum	M413DRAFT_15049	N	0.000
M422DRAFT_180219	Sphaerobolus stellatus	M422DRAFT_180219	N	0.000
M422DRAFT_71920	Sphaerobolus stellatus	M422DRAFT_71920	N	0.000
Moror_825	Moniliophthora roreri	Moror_825	N	0.000
PaG_00960	Pseudozyma aphidis	PaG_00960	N	0.000
PAN0_024c6129	Pseudozyma antarctica	PAN0_024c6129	N	0.000
PAXRUDRAFT_821096	Paxillus rubicundulus	PAXRUDRAFT_821096	N	0.000
PFL1_03819	Pseudozyma flocculosa	PFL1_03819	N	0.000
PHACADRAFT_255607	Phanerochaete carnosa	PHACADRAFT_255607	N	0.000
PHLGIDRAFT_82021	Phlebiopsis gigantea	PHLGIDRAFT_82021	N	0.000
PHSY_007464	Pseudozyma hubeiensis	PHSY_007464	N	0.000
PIIN_03157	Piriformospora indica	PIIN_03157	N	0.000
PILCRDRAFT_823319	Piloderma croceum	PILCRDRAFT_823319	N	0.000
PISMIDRAFT_670105	Pisolithus microcarpus	PISMIDRAFT_670105	N	0.000
PLEOSDRAFT_1110570	Pleurotus ostreatus	PLEOSDRAFT_1110570	N	0.000
PSEUBRA_SCAF13g01932	Pseudozyma brasiliensis	PSEUBRA_SCAF13g01932	N	0.000
SCHCODRAFT_74719	Schizophyllum commune	SCHCODRAFT_74719	N	0.000
sr15132	Sporisorium reilianum	sr15132	N	0.000
UHOR_06369	Ustilago hordei	UHOR_06369	N	0.000
UM04242	Ustilago maydis	UM04242	N	0.000
V565_017120	Rhizoctonia solani	V565_017120	N	0.000

Myotis_brandtii_RX1_10024726 (Myotis brandtii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

757 Related TFs

Myotis_brandtii_RX1_10024726 **(Myotis brandtii)
Homeodomain**