Ogr11012 (Ophisaurus gracilis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ogr11012 T226537_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.808 0.522
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.808 0.522
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.808 0.522
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.808 0.522
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.808 0.522
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.808 0.522
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.808 0.522
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.808 0.522
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.808 0.522
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.715 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.715 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.715 0.370
Otx1
M00396_2.00 		Mus musculus
NTAAKCYN
NRGMTTAN		 PBM
Berger et al.(2008)
Otx1_2325 		0.377 1.000
OTX1
M03116_2.00 		Homo sapiens
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
OTX1_1 		0.377 1.000
OTX1
M03117_2.00 		Homo sapiens
NTAATCSB
VSGATTAN		 SELEX
Jolma et al.(2013)
OTX1_2 		0.377 1.000
Otx1
M03249_2.00 		Mus musculus
NNTAAKCGGATTANN
NNTAATCCGMTTANN		 SELEX
Jolma et al.(2013)
Otx1_1 		0.377 1.000
Otx1
M03250_2.00 		Mus musculus
NTAATCCN
NGGATTAN		 SELEX
Jolma et al.(2013)
Otx1_2 		0.377 1.000
OTX1
M05022_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_HT-SELEX 		0.377 1.000
OTX1
M05024_2.00 		Homo sapiens
NTAATCCNNN
NNNGGATTAN		 SELEX
Yin et al.(2017)
OTX1_FL_HT-SELEX 		0.377 1.000
OTX1
M10673_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OTX1_Q5 		0.377 1.000
OTX1
M05023_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
OTX1_eDBD_Methyl-HT-SELEX 		0.377 1.000
OTX1
M05025_2.00 		Homo sapiens
HTAATCCNHN
NDNGGATTAD		 SELEX
Yin et al.(2017)
OTX1_FL_Methyl-HT-SELEX 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr11012 Homeodomain 123 168

Links

Other Homeodomain family TFs
Other Ophisaurus gracilis TFs

1248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1Q1_02722 Trichosporon asahii A1Q1_02722 N
A1Q1_05146 Trichosporon asahii A1Q1_05146 N
AGABI2DRAFT_214436 Agaricus bisporus AGABI2DRAFT_214436 N
BOTBODRAFT_172908 Botryobasidium botryosum BOTBODRAFT_172908 N
CERSUDRAFT_110761 Ceriporiopsis subvermispora CERSUDRAFT_110761 N
CY34DRAFT_25000 Suillus luteus CY34DRAFT_25000 N
estExt_fgeneshTM_pg.C_50362 Tremella mesenterica estExt_fgeneshTM_pg.C_50362 N
estExt_Genewise1Plus.C_10795 Heterobasidion annosum estExt_Genewise1Plus.C_10795 N
GALMADRAFT_233700 Galerina marginata GALMADRAFT_233700 N
GLOTRDRAFT_68601 Gloeophyllum trabeum GLOTRDRAFT_68601 N
HETIRDRAFT_468737 Heterobasidion irregulare HETIRDRAFT_468737 N
JAAARDRAFT_203058 Jaapia argillacea JAAARDRAFT_203058 N
K437DRAFT_132732 Tilletiaria anomala K437DRAFT_132732 N
K443DRAFT_673799 Laccaria amethystina K443DRAFT_673799 N
LACBIDRAFT_300743 Laccaria bicolor LACBIDRAFT_300743 N
M378DRAFT_155674 Amanita muscaria M378DRAFT_155674 N
M404DRAFT_134644 Pisolithus tinctorius M404DRAFT_134644 N
M407DRAFT_219867 Tulasnella calospora M407DRAFT_219867 N
M408DRAFT_325789 Serendipita vermifera M408DRAFT_325789 N
Moror_1245 Moniliophthora roreri Moror_1245 N
PaG_06601 Pseudozyma aphidis PaG_06601 N
PAN0_008d3627 Pseudozyma antarctica PAN0_008d3627 N
PAXRUDRAFT_157512 Paxillus rubicundulus PAXRUDRAFT_157512 N
PHACADRAFT_247554 Phanerochaete carnosa PHACADRAFT_247554 N
PHLGIDRAFT_83469 Phlebiopsis gigantea PHLGIDRAFT_83469 N
PHSY_000700 Pseudozyma hubeiensis PHSY_000700 N
PIIN_04099 Piriformospora indica PIIN_04099 N
PILCRDRAFT_817327 Piloderma croceum PILCRDRAFT_817327 N
PISMIDRAFT_91300 Pisolithus microcarpus PISMIDRAFT_91300 N
PLEOSDRAFT_49413 Pleurotus ostreatus PLEOSDRAFT_49413 N
SCHCODRAFT_49649 Schizophyllum commune SCHCODRAFT_49649 N
SCLCIDRAFT_108680 Scleroderma citrinum SCLCIDRAFT_108680 N
SERLA73DRAFT_49851 Serpula lacrymans SERLA73DRAFT_49851 N
sr13281 Sporisorium reilianum sr13281 N
UM02061 Ustilago maydis UM02061 N
V565_027830 Rhizoctonia solani V565_027830 N