Pm006290 (Prunus mume)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pm006290 T226640_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.805 0.688
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.562
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.417
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.417
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.417
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm006290 Homeodomain 409 459

Links

Other Homeodomain family TFs
Other Prunus mume TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava8864.m1 Manihot esculenta cassava8864.m1 I
Cla022990 Citrullus lanatus Cla022990 I
Cucsa.353000 Cucumis sativus Cucsa.353000 I
Cucsa.395470 Cucumis sativus Cucsa.395470 I
Lus10007726.g Linum usitatissimum Lus10007726.g N
Lus10018662.g Linum usitatissimum Lus10018662.g I
PK27149.1 Cannabis sativa PK27149.1 D
POPTR_0002s11660 Populus trichocarpa POPTR_0002s11660 I
POPTR_0014s01390 Populus trichocarpa POPTR_0014s01390 I