29638.m000515 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29638.m000515 T226965_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.822 0.660
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.553
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29638.m000515 Homeodomain 652 701

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bm8894 Brugia malayi Bm8894 N 0.000
BTMF_0001802901 Brugia timori BTMF_0001802901 N 0.000
LOAG_03126 Loa loa LOAG_03126 N 0.000
nLs.2.1.2.g06304 Litomosoides sigmodontis nLs.2.1.2.g06304 N 0.000
nOo.2.0.1.g02859 Onchocerca ochengi nOo.2.0.1.g02859 N 0.000
OFLC_0001600901 Onchocerca flexuosa OFLC_0001600901 N 0.000
TCLT_0000641701 Thelazia callipaeda TCLT_0000641701 N 0.000
WBGene00240585 Onchocerca volvulus WBGene00240585 N 0.000