cassava30036.valid.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava30036.valid.m1 T227095_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.832 0.895
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.832 0.895
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.824 0.807
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.803 0.877
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.803 0.877
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.803 0.877
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.793 0.877
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.793 0.877
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.793 0.842
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.684
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava30036.valid.m1 Homeodomain 127 183

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB06533.1 Alternaria brassicicola AB06533.1 N 0.000
AUEXF2481DRAFT_374368 Aureobasidium subglaciale AUEXF2481DRAFT_374368 I 0.000
CHGG_07364 Chaetomium globosum CHGG_07364 I 0.000
COCC4DRAFT_46985 Bipolaris maydis COCC4DRAFT_46985 N 0.000
COCMIDRAFT_8999 Bipolaris oryzae COCMIDRAFT_8999 N 0.000
COCSADRAFT_25239 Bipolaris sorokiniana COCSADRAFT_25239 N 0.000
COCVIDRAFT_37014 Bipolaris victoriae COCVIDRAFT_37014 N 0.000
DOTSEDRAFT_68376 Dothistroma septosporum DOTSEDRAFT_68376 I 0.000
estExt_fgenesh1_pg.C_40234 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40234 N 0.000
estExt_fgenesh1_pg.C_chr_10960 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10960 I 0.000
estExt_Genewise1.C_12176 Mycosphaerella fijiensis estExt_Genewise1.C_12176 I 0.000
GMDG_01905 Pseudogymnoascus destructans GMDG_01905 I 0.000
LEMA_P115290.1 Leptosphaeria maculans LEMA_P115290.1 N 0.000
M437DRAFT_67933 Aureobasidium melanogenum M437DRAFT_67933 I 0.000
M438DRAFT_155623 Aureobasidium pullulans M438DRAFT_155623 I 0.000
MPH_08875 Macrophomina phaseolina MPH_08875 N 0.000
MYCFIDRAFT_127068 Pseudocercospora fijiensis MYCFIDRAFT_127068 I 0.000
Mycgr3G107320 Zymoseptoria tritici Mycgr3G107320 I 0.000
MYCTH_2301920 Myceliophthora thermophila MYCTH_2301920 I 0.000
PODANS_2_4060 Podospora anserina PODANS_2_4060 I 0.000
PTT_02079 Pyrenophora teres PTT_02079 N 0.000
PV09_00811 Verruconis gallopava PV09_00811 N 0.000
SEPMUDRAFT_146091 Sphaerulina musiva SEPMUDRAFT_146091 I 0.000
SETTUDRAFT_174289 Setosphaeria turcica SETTUDRAFT_174289 N 0.000
THITE_2108095 Thielavia terrestris THITE_2108095 I 0.000
UCRNP2_458 Neofusicoccum parvum UCRNP2_458 N 0.000
V499_05963 Pseudogymnoascus pannorum V499_05963 I 0.000