fgenesh2_pg.scaffold_5000049 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh2_pg.scaffold_5000049 T227538_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.621 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.621 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.621 0.370
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.620 0.283
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.620 0.283
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.620 0.283
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.620 0.283
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.620 0.283
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.620 0.283
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.620 0.283
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.620 0.283
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.620 0.283
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_5000049 Homeodomain 136 181

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

1052 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA037382 Oryza indica BGIOSGA037382 I 0.000
BRADI4G07527 Brachypodium distachyon BRADI4G07527 I 0.000
GRMZM2G083347 Zea mays GRMZM2G083347 I 0.000
LPERR12G09780 Leersia perrieri LPERR12G09780 I 0.000
OBART12G11820 Oryza barthii OBART12G11820 N 0.000
OGLUM12G13410 Oryza glumaepatula OGLUM12G13410 I 0.000
OMERI12G08420 Oryza meridionalis OMERI12G08420 I 0.000
ONIVA12G11920 Oryza nivara ONIVA12G11920 I 0.000
OPUNC12G10470 Oryza punctata OPUNC12G10470 I 0.000
ORUFI10G07040 Oryza rufipogon ORUFI10G07040 I 0.000
OS12G0477400 Oryza sativa OS12G0477400 I 0.000
Pavir.Ca02208 Panicum virgatum Pavir.Ca02208 I 0.000
Pavir.Cb00769 Panicum virgatum Pavir.Cb00769 I 0.000
Sb08g014060 Sorghum bicolor Sb08g014060 I 0.000
Si022924m.g Setaria italica Si022924m.g I 0.000