Aquca_001_00306 (Aquilegia coerulea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Aquca_001_00306 T228011_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.862 0.982
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.862 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_001_00306.1 Homeodomain 20 79
Aquca_001_00306.2 Homeodomain 17 76
Aquca_001_00306.3 Homeodomain 17 76
Aquca_001_00306.4 Homeodomain 17 76
Aquca_001_00306.5 Homeodomain 17 76
Aquca_001_00306.6 Homeodomain 17 76
Aquca_001_00306.7 Homeodomain 17 76

Links

Other Homeodomain family TFs
Other Aquilegia coerulea TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_007_00963 Aquilegia coerulea Aquca_007_00963 N 0.000
Aquca_095_00021 Aquilegia coerulea Aquca_095_00021 N 0.000
Aquca_780_00002 Aquilegia coerulea Aquca_780_00002 N 0.000
cassava23935.valid.m1 Manihot esculenta cassava23935.valid.m1 N 0.000
Ciclev10000383m.g Citrus clementina Ciclev10000383m.g N 0.000
Eucgr.F03610 Eucalyptus grandis Eucgr.F03610 N 0.000
evm.TU.contig_24967.4 Carica papaya evm.TU.contig_24967.4 N 0.000
MDP0000722905 Malus domestica MDP0000722905 N 0.000
orange1.1g004450m.g Citrus sinensis orange1.1g004450m.g N 0.000
POPTR_0005s27900 Populus trichocarpa POPTR_0005s27900 N 0.000
PRUPE_ppa026999mg Prunus persica PRUPE_ppa026999mg N 0.000
SapurV1A.0554s0220 Salix purpurea SapurV1A.0554s0220 N 0.000
TCM_034806 Theobroma cacao TCM_034806 N 0.000
VIT_18s0122g00530 Vitis vinifera VIT_18s0122g00530 N 0.000