CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_030_00120
(
Aquilegia coerulea
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Aquca_030_00120
T228054_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.811
0.696
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626
0.565
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.618
0.435
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.618
0.435
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.618
0.435
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.618
0.435
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_030_00120.1
Homeodomain
594
642
VSVLRAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWK
Aquca_030_00120.2
Homeodomain
591
639
VSVLRAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWK
Links
Other
Homeodomain
family TFs
Other
Aquilegia coerulea
TFs
1011 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy