Cagra.0352s0025 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0352s0025 T228181_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.653 0.632
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.652 0.632
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.652 0.632
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.652 0.632
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.652 0.632
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.651 0.614
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.651 0.614
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.651 0.614
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.650 0.596
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.650 0.596
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.634 0.614
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.634 0.614
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.634 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0352s0025.1.p Homeodomain 90 147

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

557 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_03169 Capronia coronata A1O1_03169 N
A1O3_01923 Capronia epimyces A1O3_01923 N
ACLA_039280 Aspergillus clavatus CADACLAG00003549 N
AFUA_3G11380 Aspergillus fumigatus CADAFUAG00005326 N
ANIA_02905 Aspergillus nidulans CADANIAG00010184 N
ARB_02044 Arthroderma benhamiae ARB_02044 N
ATEG_04673 Aspergillus terreus CADATEAG00009625 N
AUEXF2481DRAFT_43359 Aureobasidium subglaciale AUEXF2481DRAFT_43359 N
BDDG_06367 Blastomyces dermatitidis BDDG_06367 N
CADAFLAG00002502 Aspergillus flavus CADAFLAG00002502 N
CADANGAG00002230 Aspergillus niger CADANGAG00002230 N
CADAORAG00001291 Aspergillus oryzae CADAORAG00001291 N
CIMG_03690 Coccidioides immitis CIMG_03690 N
CPC735_005930 Coccidioides posadasii CPC735_005930 N
EURHEDRAFT_403202 Aspergillus ruber EURHEDRAFT_403202 N
fgenesh1_pg.00866_#_396 Aspergillus carbonarius fgenesh1_pg.00866_#_396 N
H101_05877 Trichophyton interdigitale H101_05877 N
H102_07559 Trichophyton rubrum H102_07559 N
H105_07586 Trichophyton soudanense H105_07586 N
HCBG_06782 Histoplasma capsulatum HCBG_06782 N
HMPREF1120_06729 Exophiala dermatitidis HMPREF1120_06729 N
HMPREF1541_01688 Cyphellophora europaea HMPREF1541_01688 N
MCYG_00625 Microsporum canis MCYG_00625 N
MCYG_00625 Arthroderma otae MCYG_00625 N
MGYG_01337 Microsporum gypseum MGYG_01337 N
NCU05891 Neurospora crassa NCU05891 N
NEUTE1DRAFT_86802 Neurospora tetrasperma NEUTE1DRAFT_86802 N
NFIA_065920 Neosartorya fischeri CADNFIAG00005868 N
OIDMADRAFT_162843 Oidiodendron maius OIDMADRAFT_162843 N
PAAG_01959 Paracoccidioides sp lutzii PAAG_01959 N
PABG_02226 Paracoccidioides brasiliensis PABG_02226 N
PCH_Pc13g09650 Penicillium rubens PCH_Pc13g09650 N
PDE_04763 Penicillium oxalicum PDE_04763 N
PDIP_29650 Penicillium digitatum PDIP_29650 N
PEX1_044080 Penicillium expansum PEX1_044080 N
PFICI_03122 Pestalotiopsis fici PFICI_03122 N
PITC_061280 Penicillium italicum PITC_061280 N
PMAA_019260 Penicillium marneffei PMAA_019260 N
PMAA_019260 Talaromyces marneffei PMAA_019260 N
PV05_01674 Exophiala xenobiotica PV05_01674 N
PV06_04366 Exophiala oligosperma PV06_04366 N
PV08_10257 Exophiala spinifera PV08_10257 N
PV11_05007 Exophiala sideris PV11_05007 N
PVAR5_7731 Byssochlamys spectabilis PVAR5_7731 N
SNOG_12221 Phaeosphaeria nodorum SNOG_12221 N
SNOG_12221 Stagonospora nodorum SNOG_12221 N
TEQG_05494 Trichophyton equinum TEQG_05494 N
TESG_05752 Trichophyton tonsurans TESG_05752 N
THITE_2067650 Thielavia terrestris THITE_2067650 N
TRV_05872 Trichophyton verrucosum TRV_05872 N
TSTA_027260 Talaromyces stipitatus TSTA_027260 N
U727_00433320441 Penicillium solitum U727_00433320441 N
UREG_07450 Uncinocarpus reesii UREG_07450 N
W97_06147 Coniosporium apollinis W97_06147 N