CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.0483s0055 *(Capsella grandiflora)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Cagra.0483s0055	T228185_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-12 M00865_2.00	Arabidopsis thaliana	NNNNNNNN	NNNNNNNN	PBM Franco-Zorrilla et al.(2014) ATHB12	0.834	0.982
ATHB-12 M02045_2.00	Arabidopsis thaliana	BHWWWWWWDV	BHWWWWWWDV	PBM Weirauch et al.(2014) pTH7207	0.834	0.982
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.633	0.860
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.633	0.860
Q39944_HELAN M10802_2.00	Helianthus annuus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HAHB4_01	0.630	0.579
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.618	0.614
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.618	0.614
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.0483s0055.1.p	Homeodomain	29	85	SYNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKT

Links
Other Homeodomain family TFs
Other *Capsella grandiflora* TFs