Cagra.0808s0012 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0808s0012 T228193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.711
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.663 0.444
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.663 0.444
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.663 0.444
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.663 0.444
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.578
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0808s0012.1.p Homeodomain 305 352

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

1020 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB00149.1 Alternaria brassicicola AB00149.1 I 0.000
ACLA_091820 Aspergillus clavatus CADACLAG00008439 I 0.000
AFUA_2G03020 Aspergillus fumigatus CADAFUAG00003420 I 0.000
ANIA_04524 Aspergillus nidulans CADANIAG00005916 D 0.000
ATEG_09592 Aspergillus terreus CADATEAG00004701 I 0.000
AUEXF2481DRAFT_3951 Aureobasidium subglaciale AUEXF2481DRAFT_3951 N 0.000
BBA_03262 Beauveria bassiana BBA_03262 I 0.000
BDDG_01946 Blastomyces dermatitidis BDDG_01946 I 0.000
CADAORAG00008664 Aspergillus oryzae CADAORAG00008664 I 0.000
CCM_01606 Cordyceps militaris CCM_01606 I 0.000
CFIO01_13556 Colletotrichum fioriniae CFIO01_13556 I 0.000
CGGC5_5234 Colletotrichum gloeosporioides CGGC5_5234 I 0.000
CH063_08705 Colletotrichum higginsianum CH063_08705 I 0.000
CHGG_05536 Chaetomium globosum CHGG_05536 I 0.000
CIMG_04575 Coccidioides immitis CIMG_04575 I 0.000
Cob_12050 Colletotrichum orbiculare Cob_12050 I 0.000
COCC4DRAFT_156032 Bipolaris maydis COCC4DRAFT_156032 I 0.000
COCCADRAFT_36163 Bipolaris zeicola COCCADRAFT_36163 I 0.000
COCMIDRAFT_32036 Bipolaris oryzae COCMIDRAFT_32036 I 0.000
COCSADRAFT_213056 Bipolaris sorokiniana COCSADRAFT_213056 I 0.000
COCVIDRAFT_83639 Bipolaris victoriae COCVIDRAFT_83639 I 0.000
CPC735_072160 Coccidioides posadasii CPC735_072160 I 0.000
CSUB01_05543 Colletotrichum sublineola CSUB01_05543 I 0.000
CTHT_0071270 Chaetomium thermophilum CTHT_0071270 I 0.000
DOTSEDRAFT_116530 Dothistroma septosporum DOTSEDRAFT_116530 I 0.000
estExt_fgenesh2_pg.C_200015 Neurospora discreta estExt_fgenesh2_pg.C_200015 I 0.000
estExt_Genewise1Plus.C_21297 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_21297 I 0.000
e_gw1.00009.336.1 Aspergillus carbonarius e_gw1.00009.336.1 I 0.000
F503_08470 Ophiostoma piceae uamh F503_08470 I 0.000
FFUJ_07927 Fusarium fujikuroi FFUJ_07927 I 0.000
fgenesh1_pg.sca_20_chr6_4_0000490 Nectria haematococca fgenesh1_pg.sca_20_chr6_4_0000490 I 0.000
FGRRES_02538 Fusarium graminearum FGRRES_02538 I 0.000
FOXG_10566 Fusarium oxysporum FOXG_10566 I 0.000
FPSE_08658 Fusarium pseudograminearum FPSE_08658 I 0.000
FVEG_09213 Fusarium verticillioides FVEG_09213 I 0.000
GLRG_00217 Colletotrichum graminicola GLRG_00217 I 0.000
GSTUM_00007236001 Tuber melanosporum GSTUM_00007236001 I 0.000
gw1.1.3793.1 Mycosphaerella graminicola gw1.1.3793.1 I 0.000
gw1.13.456.1 Mycosphaerella fijiensis gw1.13.456.1 I 0.000
H072_4198 Dactylellina haptotyla H072_4198 I 0.000
H101_05733 Trichophyton interdigitale H101_05733 I 0.000
HCBG_00496 Histoplasma capsulatum HCBG_00496 I 0.000
HMPREF1624_06657 Sporothrix schenckii HMPREF1624_06657 I 0.000
LEMA_P069020.1 Leptosphaeria maculans LEMA_P069020.1 I 0.000
M437DRAFT_72532 Aureobasidium melanogenum M437DRAFT_72532 I 0.000
M438DRAFT_354692 Aureobasidium pullulans M438DRAFT_354692 I 0.000
MAC_04099 Metarhizium acridum MAC_04099 I 0.000
MAJ_06385 Metarhizium majus MAJ_06385 I 0.000
MAM_04656 Metarhizium album MAM_04656 I 0.000
MBM_01938 Marssonina brunnea MBM_01938 I 0.000
MBR_05419 Metarhizium brunneum MBR_05419 I 0.000
MCYG_05889 Microsporum canis MCYG_05889 I 0.000
MGU_05479 Metarhizium guizhouense MGU_05479 I 0.000
MGYG_06082 Microsporum gypseum MGYG_06082 I 0.000
MPH_09871 Macrophomina phaseolina MPH_09871 I 0.000
MYCFIDRAFT_112048 Pseudocercospora fijiensis MYCFIDRAFT_112048 I 0.000
Mycgr3G28684 Zymoseptoria tritici Mycgr3G28684 I 0.000
MYCTH_50303 Myceliophthora thermophila MYCTH_50303 I 0.000
NCU07834 Neurospora crassa NCU07834 D 0.000
NechaG81864 Fusarium solani NechaG81864 I 0.000
NEUTE1DRAFT_80911 Neurospora tetrasperma NEUTE1DRAFT_80911 I 0.000
NFIA_035370 Neosartorya fischeri CADNFIAG00003845 I 0.000
PAAG_06795 Paracoccidioides sp lutzii PAAG_06795 I 0.000
PABG_01081 Paracoccidioides brasiliensis PABG_01081 I 0.000
PDE_05251 Penicillium oxalicum PDE_05251 I 0.000
PFICI_05808 Pestalotiopsis fici PFICI_05808 I 0.000
PMAA_055660 Penicillium marneffei PMAA_055660 I 0.000
PMAA_055660 Talaromyces marneffei PMAA_055660 I 0.000
PTRG_10693 Pyrenophora triticirepentis PTRG_10693 I 0.000
PTT_08996 Pyrenophora teres PTT_08996 I 0.000
PV09_00458 Verruconis gallopava PV09_00458 I 0.000
PVAR5_1965 Byssochlamys spectabilis PVAR5_1965 I 0.000
S40285_00496 Stachybotrys chlorohalonata S40285_00496 I 0.000
SAPIO_CDS7771 Scedosporium apiospermum SAPIO_CDS7771 I 0.000
SEPMUDRAFT_140497 Sphaerulina musiva SEPMUDRAFT_140497 I 0.000
SETTUDRAFT_41277 Setosphaeria turcica SETTUDRAFT_41277 I 0.000
SMAC_02112 Sordaria macrospora SMAC_02112 I 0.000
SNOG_09800 Stagonospora nodorum SNOG_09800 I 0.000
SNOG_09800 Phaeosphaeria nodorum SNOG_09800 I 0.000
TEQG_06366 Trichophyton equinum TEQG_06366 I 0.000
TSTA_016710 Talaromyces stipitatus TSTA_016710 I 0.000
UCRNP2_4750 Neofusicoccum parvum UCRNP2_4750 I 0.000
V499_03771 Pseudogymnoascus pannorum V499_03771 I 0.000
VDAG_10303 Verticillium dahliae VDAG_10303 I 0.000
W97_06488 Coniosporium apollinis W97_06488 I 0.000
X797_009564 Metarhizium robertsii X797_009564 I 0.000