Cagra.1360s0005 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.1360s0005 T228208_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.703 0.651
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.662 0.442
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.662 0.442
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.662 0.442
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.662 0.442
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.624 0.581
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1360s0005.1.p Homeodomain 454 499

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASU_07704 Ascaris suum ASU_07704 N 0.000
Bm1894 Brugia malayi Bm1894 N 0.000
BTMF_0001408601 Brugia timori BTMF_0001408601 N 0.000
DME_0000426101 Dracunculus medinensis DME_0000426101 N 0.000
EEL_0000930001 Elaeophora elaphi EEL_0000930001 N 0.000
EVEC_0001019201 Enterobius vermicularis EVEC_0001019201 N 0.000
LOAG_10033 Loa loa LOAG_10033 N 0.000
nAv.1.0.1.g06574 Acanthocheilonema viteae nAv.1.0.1.g06574 N 0.000
nDi.2.2.2.g04749 Dirofilaria immitis nDi.2.2.2.g04749 N 0.000
nLs.2.1.2.g06426 Litomosoides sigmodontis nLs.2.1.2.g06426 N 0.000
nOo.2.0.1.g08128 Onchocerca ochengi nOo.2.0.1.g08128 N 0.000
SMUV_0000583701 Syphacia muris SMUV_0000583701 N 0.000
TCNE_0001749201 Toxocara canis TCNE_0001749201 N 0.000
WBGene00246733 Onchocerca volvulus WBGene00246733 N 0.000
WUBG_07288 Wuchereria bancrofti WUBG_07288 N 0.000