Cagra.4093s0017 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.4093s0017 T228243_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.866 0.964
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.866 0.964
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.861 0.911
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.861 0.911
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.861 0.911
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4093s0017.1.p Homeodomain 14 73

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000006001 Ailuropoda melanoleuca ENSAMEG00000006001 N 0.000
ENSBTAP00000044076-D1 Bos grunniens ENSBTAP00000044076-D1 N 0.000
ENSDNOG00000011332 Dasypus novemcinctus ENSDNOG00000011332 N 0.000
ENSGGOG00000025393 Gorilla gorilla ENSGGOG00000025393 N 0.000
ENSMODG00000025642 Monodelphis domestica ENSMODG00000025642 N 0.000
ENSMPUG00000010251 Mustela putorius furo ENSMPUG00000010251 N 0.000
ENSOARG00000005381 Ovis aries ENSOARG00000005381 N 0.000
ENSOCUG00000002793 Oryctolagus cuniculus ENSOCUG00000002793 N 0.000
ENSOGAG00000005848 Otolemur garnettii ENSOGAG00000005848 N 0.000
ENSOGAG00000033284 Otolemur garnettii ENSOGAG00000033284 N 0.000
ENSP00000276603 Macaca fascicularis ENSP00000276603 N 0.000
ENSPANG00000025943 Papio anubis ENSPANG00000025943 N 0.000
ENSPPYG00000003709 Pongo abelii ENSPPYG00000003709 N 0.000
ENSPPYG00000018261 Pongo abelii ENSPPYG00000018261 N 0.000
ENSPPYG00000018669 Pongo abelii ENSPPYG00000018669 N 0.000
ENSSTOG00000004560 Ictidomys tridecemlineatus ENSSTOG00000004560 N 0.000
ENSSTOG00000025051 Ictidomys tridecemlineatus ENSSTOG00000025051 N 0.000
ENSSTOG00000026069 Ictidomys tridecemlineatus ENSSTOG00000026069 N 0.000
ENSTSYG00000006478 Tarsius syrichta ENSTSYG00000006478 N 0.000
Myotis_brandtii_TERF1_10031667 Myotis brandtii Myotis_brandtii_TERF1_10031667 N 0.000
Terf1 Rattus norvegicus ENSRNOG00000007291 N 0.000
TERF1 Bos taurus ENSBTAG00000032982 N 0.000
TERF1 Canis familiaris ENSCAFG00000007975 N 0.000
TERF1 Choloepus hoffmanni ENSCHOG00000002407 N 0.000
TERF1 Vicugna pacos ENSVPAG00000000533 N 0.000
TERF1 Tursiops truncatus ENSTTRG00000003745 N 0.000
TERF1 Callithrix jacchus ENSCJAG00000007714 N 0.000
TERF1 Tupaia belangeri ENSTBEG00000011779 N 0.000
TERF1 Cavia porcellus ENSCPOG00000009638 N 0.000
Terf1 Dipodomys ordii ENSDORG00000003657 N 0.000
TERF1 Equus caballus ENSECAG00000011894 N 0.000
TERF1 Sus scrofa ENSSSCG00000006184 N 0.000
TERF1 Ornithorhynchus anatinus ENSOANG00000001722 N 0.000
TERF1 Pteropus vampyrus ENSPVAG00000003792 N 0.000
TERF1 Pan troglodytes ENSPTRG00000022919 N 0.000
TERF1 Erinaceus europaeus ENSEEUG00000008963 N 0.000
TERF1 Felis catus ENSFCAG00000026385 N 0.000
TERF1 Homo sapiens ENSG00000147601 N 0.000
TERF1 Procavia capensis ENSPCAG00000007698 N 0.000
TERF1 Gorilla gorilla ENSGGOG00000026727 N 0.000
TERF1 Loxodonta africana ENSLAFG00000004308 N 0.000
TERF1 Myotis lucifugus ENSMLUG00000012171 N 0.000
TERF1 Macaca mulatta ENSMMUG00000023208 N 0.000
Terf1 Mus musculus ENSMUSG00000025925 N 0.000