gene28834-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene28834-v1.0-hybrid T228640_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.810 0.652
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.565
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.618 0.435
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.618 0.435
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.618 0.435
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.618 0.435
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna28834.1-v1.0-hybrid Homeodomain 113 161

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

1010 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012083 Calypte anna Aan_R012083 I 0.000
Afo_R008076 Aptenodytes forsteri Afo_R008076 I 0.000
Alligator_sinensis_CCG004258.1 Alligator sinensis Alligator_sinensis_CCG004258.1 I 0.000
Brh_R009918 Buceros rhinoceros Brh_R009918 I 0.000
Cmyd_10021288 Chelonia mydas Cmyd_10021288 I 0.000
ENSAMEG00000004869 Ailuropoda melanoleuca ENSAMEG00000004869 I 0.000
ENSAMXG00000000592 Astyanax mexicanus ENSAMXG00000000592 I 0.000
ENSAPLG00000011353 Anas platyrhynchos ENSAPLG00000011353 I 0.000
ENSCSAG00000011261 Chlorocebus sabaeus ENSCSAG00000011261 I 0.000
ENSDNOG00000006678 Dasypus novemcinctus ENSDNOG00000006678 I 0.000
ENSDNOG00000018047 Dasypus novemcinctus ENSDNOG00000018047 I 0.000
ENSFALG00000004834 Ficedula albicollis ENSFALG00000004834 I 0.000
ENSGALG00000013420 Gallus gallus ENSGALG00000013420 I 0.000
ENSGMOG00000005312 Gadus morhua ENSGMOG00000005312 I 0.000
ENSLACG00000007969 Latimeria chalumnae ENSLACG00000007969 I 0.000
ENSLOCG00000016556 Lepisosteus oculatus ENSLOCG00000016556 I 0.000
ENSMEUG00000015998 Macropus eugenii ENSMEUG00000015998 I 0.000
ENSMODG00000018349 Monodelphis domestica ENSMODG00000018349 I 0.000
ENSMPUG00000009407 Mustela putorius furo ENSMPUG00000009407 I 0.000
ENSOANG00000001393 Ornithorhynchus anatinus ENSOANG00000001393 I 0.000
ENSOARG00000011054 Ovis aries ENSOARG00000011054 I 0.000
ENSP00000342307-D1 Bos grunniens ENSP00000342307-D1 I 0.000
ENSPANG00000004991 Papio anubis ENSPANG00000004991 I 0.000
ENSPPYG00000004153 Pongo abelii ENSPPYG00000004153 I 0.000
ENSPSIG00000016445 Pelodiscus sinensis ENSPSIG00000016445 I 0.000
ENSSHAG00000013615 Sarcophilus harrisii ENSSHAG00000013615 I 0.000
ENSSTOG00000016089 Ictidomys tridecemlineatus ENSSTOG00000016089 I 0.000
ENSTGUG00000013153 Taeniopygia guttata ENSTGUG00000013153 I 0.000
ENSTGUG00000013811 Taeniopygia guttata ENSTGUG00000013811 I 0.000
FOXM1 Sus scrofa ENSSSCG00000000739 I 0.000
Foxm1 Rattus norvegicus ENSRNOG00000005936 I 0.000
FOXM1 Pteropus vampyrus ENSPVAG00000013227 I 0.000
foxm1 Tetraodon nigroviridis ENSTNIG00000011394 I 0.000
foxm1 Takifugu rubripes ENSTRUG00000015839 I 0.000
foxm1 Xenopus tropicalis XB-GENE-854081 I 0.000
FOXM1 Procavia capensis ENSPCAG00000013185 I 0.000
Foxm1 Mus musculus ENSMUSG00000001517 D 0.000
FOXM1 Ochotona princeps ENSOPRG00000015416 I 0.000
FOXM1 Bos taurus ENSBTAG00000015875 I 0.000
FOXM1 Canis familiaris ENSCAFG00000015642 I 0.000
FOXM1 Choloepus hoffmanni ENSCHOG00000005195 I 0.000
FOXM1 Callithrix jacchus ENSCJAG00000018781 I 0.000
FOXM1 Cavia porcellus ENSCPOG00000015373 I 0.000
foxm1 Danio rerio ENSDARG00000003200 I 0.000
Foxm1 Dipodomys ordii ENSDORG00000015227 I 0.000
FOXM1 Equus caballus ENSECAG00000019129 I 0.000
FOXM1 Erinaceus europaeus ENSEEUG00000009221 I 0.000
FOXM1 Echinops telfairi ENSETEG00000019867 I 0.000
FOXM1 Felis catus ENSFCAG00000025605 I 0.000
FOXM1 Homo sapiens ENSG00000111206 D 0.000
FOXM1 Gorilla gorilla ENSGGOG00000009402 I 0.000
FOXM1 Loxodonta africana ENSLAFG00000002856 I 0.000
FOXM1 Meleagris gallopavo ENSMGAG00000013924 D 0.000
FOXM1 Microcebus murinus ENSMICG00000000100 I 0.000
FOXM1 Myotis lucifugus ENSMLUG00000005292 I 0.000
FOXM1 Oryctolagus cuniculus ENSOCUG00000002703 I 0.000
FOXM1 Otolemur garnettii ENSOGAG00000034635 I 0.000
foxm1 Oryzias latipes ENSORLG00000016140 I 0.000
foxm1.S Xenopus laevis XB-GENE-854084 I 0.000
Gfo_R008440 Geospiza fortis Gfo_R008440 I 0.000
Myotis_brandtii_FOXM1_10028675 Myotis brandtii Myotis_brandtii_FOXM1_10028675 I 0.000
Tal_R011971 Tyto alba Tal_R011971 I 0.000