Gorai.009G135100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.009G135100 T228771_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.797 0.754
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.797 0.754
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.797 0.754
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.772 0.667
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.772 0.667
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.772 0.667
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.772 0.667
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.765 0.667
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.765 0.667
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.758 0.596
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.749 0.702
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.749 0.702
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.749 0.702
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.723 0.632
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.723 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G135100.1 Homeodomain 103 159
Gorai.009G135100.2 Homeodomain 103 159
Gorai.009G135100.3 Homeodomain 103 159
Gorai.009G135100.4 Homeodomain 60 116

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

613 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008738 Calypte anna Aan_R008738 N
Afo_R010661 Aptenodytes forsteri Afo_R010661 N
ahr2 Danio rerio ENSDARG00000021833 N
ahr2 Gasterosteus aculeatus ENSGACG00000008466 N
ahr2 Tetraodon nigroviridis ENSTNIG00000017165 N
ahr2a Takifugu rubripes ENSTRUG00000009303 N
ahrr Takifugu rubripes ENSTRUG00000003745 N
ENSAPLG00000003921 Anas platyrhynchos ENSAPLG00000003921 N
ENSGALG00000023742 Gallus gallus ENSGALG00000023742 N
ENSGMOG00000004709 Gadus morhua ENSGMOG00000004709 N
ENSLACG00000012651 Latimeria chalumnae ENSLACG00000012651 N
ENSLOCG00000013271 Lepisosteus oculatus ENSLOCG00000013271 N
ENSMEUG00000006235 Macropus eugenii ENSMEUG00000006235 N
ENSOCUG00000028055 Oryctolagus cuniculus ENSOCUG00000028055 N
ENSONIG00000010232 Oreochromis niloticus ENSONIG00000010232 N
ENSOPRG00000010358 Ochotona princeps ENSOPRG00000010358 I
ENSORLG00000018196 Oryzias latipes ENSORLG00000018196 N
Gfo_R012068 Geospiza fortis Gfo_R012068 N
Pvit_18498 Pogona vitticeps Pvit_18498 N
XP_002161735.1 Hydra magnipapillata XP_002161735.1 I