MDP0000579882 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000579882 T229093_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.813 0.842
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.809 0.772
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.809 0.772
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.807 0.772
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.807 0.772
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.807 0.772
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.773 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.773 0.702
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.751 0.754
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.751 0.737
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.751 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000579882 Homeodomain 145 201

Links

Other Homeodomain family TFs
Other Malus domestica TFs

694 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
1703276C Xenopus laevis 1703276C N 0.000
1703276D Xenopus laevis 1703276D I 0.000
AMAM004568 Anopheles maculatus AMAM004568 N 0.000
AMIN006246 Anopheles minimus AMIN006246 N 0.000
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N 0.000
CAA41845 Xenopus laevis CAA41845 N 0.000
CAA41846 Xenopus laevis CAA41846 I 0.000
Carubv10007218m.g Capsella rubella Carubv10007218m.g N 0.000
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N 0.000
Ca_08015 Cicer arietinum Ca_08015 N 0.000
CLEC004114 Cimex lectularius CLEC004114 N 0.000
CTHT_0029110 Chaetomium thermophilum CTHT_0029110 N 0.000
F775_07305 Aegilops tauschii F775_07305 N 0.000
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.000
gene25833-v1.0-hybrid Fragaria vesca gene25833-v1.0-hybrid N 0.000
GRMZM2G004334 Zea mays GRMZM2G004334 N 0.000
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.000
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.000
LDEC016573 Leptinotarsa decemlineata LDEC016573 N 0.000
MDP0000690933 Malus domestica MDP0000690933 N 0.000
mgf006959m Mimulus guttatus mgf006959m N 0.000
OFLC_0000421701 Onchocerca flexuosa OFLC_0000421701 N 0.000
OLONG_008306 Oryza longistaminata OLONG_008306 N 0.000
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.000
OMERI08G08060 Oryza meridionalis OMERI08G08060 N 0.000
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N 0.000
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.000
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N 0.000
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N 0.000
PPAI007203 Phlebotomus papatasi PPAI007203 N 0.000
Tal_R011355 Tyto alba Tal_R011355 N 0.000
THITE_2107332 Thielavia terrestris THITE_2107332 I 0.000
Traes_1AS_8C62DF06E Triticum aestivum Traes_1AS_8C62DF06E N 0.000
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N 0.000
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N 0.000
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N 0.000