Pavir.J26794 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J26794 T229359_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.822 0.938
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.822 0.917
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.816 0.854
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.785 0.896
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.676 0.479
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.663 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.663 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.663 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.663 0.438
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26794.1.p Homeodomain 237 287
Pavir.J26794.2.p Homeodomain 237 287

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

507 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriAFL085C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL085C I
AGABI2DRAFT_176339 Agaricus bisporus AGABI2DRAFT_176339 I
AGABI2DRAFT_70614 Agaricus bisporus AGABI2DRAFT_70614 N
AGOS_AFL085C Ashbya gossypii AGOS_AFL085C I
ALNC14_032040 Albugo laibachii ALNC14_032040 N
AUEXF2481DRAFT_4075 Aureobasidium subglaciale AUEXF2481DRAFT_4075 N
BN946_scf184851.g74 Trametes cinnabarina BN946_scf184851.g74 I
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I
BOTBODRAFT_102648 Botryobasidium botryosum BOTBODRAFT_102648 I
BOTBODRAFT_110728 Botryobasidium botryosum BOTBODRAFT_110728 I
BOTBODRAFT_87464 Botryobasidium botryosum BOTBODRAFT_87464 I
CC1G_10208 Coprinopsis cinerea CC1G_10208 I
CERSUDRAFT_48013 Ceriporiopsis subvermispora CERSUDRAFT_48013 N
CLUG_04646 Candida lusitaniae CLUG_04646 I
CLUG_04646 Clavispora lusitaniae CLUG_04646 I
CY34DRAFT_22472 Suillus luteus CY34DRAFT_22472 N
CY34DRAFT_301446 Suillus luteus CY34DRAFT_301446 I
DACRYDRAFT_21288 Dacryopinax sp DACRYDRAFT_21288 I
DACRYDRAFT_70902 Dacryopinax sp DACRYDRAFT_70902 I
DEHA2A03608g Debaryomyces hansenii DEHA2A03608g I
DICSQDRAFT_139749 Dichomitus squalens DICSQDRAFT_139749 I
DOTSEDRAFT_72541 Dothistroma septosporum DOTSEDRAFT_72541 I
E5Q_06685 Mixia osmundae E5Q_06685 I
Ecym_2208 Eremothecium cymbalariae Ecym_2208 I
EDP41992.1 Malassezia globosa EDP41992.1 I
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I
ENSTNIG00000019520 Tetraodon nigroviridis ENSTNIG00000019520 N
ENSTRUG00000004613 Takifugu rubripes ENSTRUG00000004613 I
ENSTRUG00000008763 Takifugu rubripes ENSTRUG00000008763 I
ENSTRUG00000012122 Takifugu rubripes ENSTRUG00000012122 I
estExt_fgenesh1_pg.C_30124 Sporobolomyces roseus estExt_fgenesh1_pg.C_30124 I
estExt_Genewise1.C_280011 Phycomyces blakesleeanus estExt_Genewise1.C_280011 N
estExt_Genewise1Plus.C_12171 Mucor circinelloides estExt_Genewise1Plus.C_12171 N
e_gw1.6.1274.1 Mucor circinelloides e_gw1.6.1274.1 I
e_gw1.8.771.1 Mucor circinelloides e_gw1.8.771.1 N
fgenesh1_pg.C_scaffold_3000687 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_3000687 I
fgenesh1_pg.C_scaffold_8000068 Sporobolomyces roseus fgenesh1_pg.C_scaffold_8000068 I
fgeneshPB_pg.8__251 Phycomyces blakesleeanus fgeneshPB_pg.8__251 N
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I
FIBRA_03155 Fibroporia radiculosa FIBRA_03155 I
FOMPIDRAFT_1100359 Fomitopsis pinicola FOMPIDRAFT_1100359 I
FOMPIDRAFT_1134545 Fomitopsis pinicola FOMPIDRAFT_1134545 I
GALMADRAFT_60919 Galerina marginata GALMADRAFT_60919 N
GALMADRAFT_77741 Galerina marginata GALMADRAFT_77741 I
GLOINDRAFT_71916 Rhizophagus irregularis GLOINDRAFT_71916 N
GLOTRDRAFT_35422 Gloeophyllum trabeum GLOTRDRAFT_35422 I
GLOTRDRAFT_35481 Gloeophyllum trabeum GLOTRDRAFT_35481 I
GLOTRDRAFT_39410 Gloeophyllum trabeum GLOTRDRAFT_39410 N
GSPATT00036105001 Paramecium tetraurelia GSPATT00036105001 N
gw1.2.1743.1 Heterobasidion annosum gw1.2.1743.1 I
gw1.3.1948.1 Mucor circinelloides gw1.3.1948.1 I
gw1.5.1361.1 Mucor circinelloides gw1.5.1361.1 N
gw1.8.770.1 Mucor circinelloides gw1.8.770.1 N
gw1.8.772.1 Mucor circinelloides gw1.8.772.1 N
gww1.3.1.288.1 Pichia stipitis gww1.3.1.288.1 I
GYMLUDRAFT_144307 Gymnopus luxurians GYMLUDRAFT_144307 N
HETIRDRAFT_242938 Heterobasidion irregulare HETIRDRAFT_242938 I
HETIRDRAFT_244333 Heterobasidion irregulare HETIRDRAFT_244333 N
HSF4 Bos taurus ENSBTAG00000003514 I
HSF4 Canis familiaris ENSCAFG00000020379 I
HSF4 Cavia porcellus ENSCPOG00000010834 I
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I
Hsf4 Dipodomys ordii ENSDORG00000015128 I
HSF4 Equus caballus ENSECAG00000016708 I
HSF4 Felis catus ENSFCAG00000014099 I
HSF4 Homo sapiens ENSG00000102878 D
HSF4 Gorilla gorilla ENSGGOG00000011899 I
HSF4 Microcebus murinus ENSMICG00000007714 I
HSF4 Myotis lucifugus ENSMLUG00000011083 I
HSF4 Macaca mulatta ENSMMUG00000005906 I
Hsf4 Mus musculus ENSMUSG00000033249 I
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I
HSF4 Otolemur garnettii ENSOGAG00000001391 I
HSF4 Ochotona princeps ENSOPRG00000015074 I
HSF4 Pan troglodytes ENSPTRG00000034007 I
HSF4 Pteropus vampyrus ENSPVAG00000000402 I
HSF4 Sus scrofa ENSSSCG00000002792 I
HSF4 Tursiops truncatus ENSTTRG00000010241 I
HYDPIDRAFT_32921 Hydnomerulius pinastri HYDPIDRAFT_32921 I
ISCW017545 Ixodes scapularis ISCW017545 N
J056_001839 Wallemia ichthyophaga J056_001839 I
JAAARDRAFT_122806 Jaapia argillacea JAAARDRAFT_122806 I
JAAARDRAFT_67635 Jaapia argillacea JAAARDRAFT_67635 I
K437DRAFT_224239 Tilletiaria anomala K437DRAFT_224239 I
K443DRAFT_90832 Laccaria amethystina K443DRAFT_90832 I
LACBIDRAFT_150048 Laccaria bicolor LACBIDRAFT_150048 I
LELG_03593 Lodderomyces elongisporus LELG_03593 I
M378DRAFT_184361 Amanita muscaria M378DRAFT_184361 N
M378DRAFT_74283 Amanita muscaria M378DRAFT_74283 I
M404DRAFT_154909 Pisolithus tinctorius M404DRAFT_154909 I
M404DRAFT_161564 Pisolithus tinctorius M404DRAFT_161564 N
M404DRAFT_484428 Pisolithus tinctorius M404DRAFT_484428 N
M407DRAFT_35594 Tulasnella calospora M407DRAFT_35594 I
M407DRAFT_66111 Tulasnella calospora M407DRAFT_66111 I
M408DRAFT_38378 Serendipita vermifera M408DRAFT_38378 N
M413DRAFT_440933 Hebeloma cylindrosporum M413DRAFT_440933 I
M413DRAFT_74768 Hebeloma cylindrosporum M413DRAFT_74768 N
M422DRAFT_213064 Sphaerobolus stellatus M422DRAFT_213064 I
M437DRAFT_56721 Aureobasidium melanogenum M437DRAFT_56721 N
M438DRAFT_272047 Aureobasidium pullulans M438DRAFT_272047 N
MELLADRAFT_31826 Melampsora laricipopulina MELLADRAFT_31826 N
MELLADRAFT_42736 Melampsora laricipopulina MELLADRAFT_42736 I
Moror_17043 Moniliophthora roreri Moror_17043 N
MVLG_03900 Microbotryum violaceum MVLG_03900 I
NEMVEDRAFT_v1g86916 Nematostella vectensis NEMVEDRAFT_v1g86916 I
PaG_01262 Pseudozyma aphidis PaG_01262 I
PaG_03584 Pseudozyma aphidis PaG_03584 I
PAN0_017c5548 Pseudozyma antarctica PAN0_017c5548 I
PAXINDRAFT_87057 Paxillus involutus PAXINDRAFT_87057 N
PAXRUDRAFT_149609 Paxillus rubicundulus PAXRUDRAFT_149609 N
PAXRUDRAFT_162335 Paxillus rubicundulus PAXRUDRAFT_162335 I
PFL1_03124 Pseudozyma flocculosa PFL1_03124 N
PFL1_05375 Pseudozyma flocculosa PFL1_05375 I
PFL1_06413 Pseudozyma flocculosa PFL1_06413 I
PGTG_02256 Puccinia graminis PGTG_02256 I
PGTG_06588 Puccinia graminis PGTG_06588 I
PGTG_18922 Puccinia graminis PGTG_18922 N
PHACADRAFT_264175 Phanerochaete carnosa PHACADRAFT_264175 I
PHLGIDRAFT_68835 Phlebiopsis gigantea PHLGIDRAFT_68835 I
PHSY_000528 Pseudozyma hubeiensis PHSY_000528 N
PHSY_005227 Pseudozyma hubeiensis PHSY_005227 I
PHSY_005564 Pseudozyma hubeiensis PHSY_005564 I
PICST_16323 Scheffersomyces stipitis PICST_16323 I
PIIN_04679 Piriformospora indica PIIN_04679 I
PILCRDRAFT_30307 Piloderma croceum PILCRDRAFT_30307 N
PILCRDRAFT_816387 Piloderma croceum PILCRDRAFT_816387 I
PISMIDRAFT_106875 Pisolithus microcarpus PISMIDRAFT_106875 I
PISMIDRAFT_648350 Pisolithus microcarpus PISMIDRAFT_648350 N
PLEOSDRAFT_1015572 Pleurotus ostreatus PLEOSDRAFT_1015572 I
PLEOSDRAFT_1043224 Pleurotus ostreatus PLEOSDRAFT_1043224 N
PLEOSDRAFT_1046174 Pleurotus ostreatus PLEOSDRAFT_1046174 I
PNEG_02594 Pneumocystis murina PNEG_02594 I
POSPLDRAFT_96258 Postia placenta POSPLDRAFT_96258 I
PredSwiss_ASS2010_3259.1 Pneumocystis carinii PredSwiss_ASS2010_3259.1 I
PredSwiss_CON2839.2 Pneumocystis carinii PredSwiss_CON2839.2 I
PredSwiss_EST948.1 Pneumocystis carinii PredSwiss_EST948.1 I
PSEUBRA_SCAF16g05334 Pseudozyma brasiliensis PSEUBRA_SCAF16g05334 N
PSEUBRA_SCAF21g03367 Pseudozyma brasiliensis PSEUBRA_SCAF21g03367 I
PSEUBRA_SCAF6g00904 Pseudozyma brasiliensis PSEUBRA_SCAF6g00904 I
PTTG_04989 Puccinia triticina PTTG_04989 N
PTTG_05194 Puccinia triticina PTTG_05194 I
RHTO_01429 Rhodosporidium toruloides RHTO_01429 I
RHTO_06861 Rhodosporidium toruloides RHTO_06861 I
RO3G_03231 Rhizopus oryzae RO3G_03231 N
RO3G_03272 Rhizopus oryzae RO3G_03272 I
RO3G_05687 Rhizopus oryzae RO3G_05687 N
RO3G_05814 Rhizopus oryzae RO3G_05814 I
RO3G_10499 Rhizopus oryzae RO3G_10499 I
RO3G_15483 Rhizopus oryzae RO3G_15483 N
RO3G_17136 Rhizopus oryzae RO3G_17136 I
RTG_02995 Rhodotorula glutinis RTG_02995 I
SCHCODRAFT_255836 Schizophyllum commune SCHCODRAFT_255836 I
SCHCODRAFT_269941 Schizophyllum commune SCHCODRAFT_269941 I
SCLCIDRAFT_106370 Scleroderma citrinum SCLCIDRAFT_106370 I
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I
SEPMUDRAFT_126550 Sphaerulina musiva SEPMUDRAFT_126550 I
SERLA73DRAFT_60481 Serpula lacrymans SERLA73DRAFT_60481 I
SERLA73DRAFT_66913 Serpula lacrymans SERLA73DRAFT_66913 N
SPPG_01116 Spizellomyces punctatus SPPG_01116 I
SPPG_03494 Spizellomyces punctatus SPPG_03494 N
SPPG_05445 Spizellomyces punctatus SPPG_05445 I
SPPG_07283 Spizellomyces punctatus SPPG_07283 I
SPRG_00136 Saprolegnia parasitica SPRG_00136 N
sr10015 Sporisorium reilianum sr10015 I
sr13089 Sporisorium reilianum sr13089 N
sr14110 Sporisorium reilianum sr14110 I
SSTP_0000347500 Strongyloides stercoralis SSTP_0000347500 N
TBLA_0A02000 Tetrapisispora blattae TBLA_0A02000 I
TBLA_0G02700 Tetrapisispora blattae TBLA_0G02700 I
UHOR_03142 Ustilago hordei UHOR_03142 N
UHOR_04781 Ustilago hordei UHOR_04781 I
UHOR_08093 Ustilago hordei UHOR_08093 I
UM03053 Ustilago maydis UM03053 I
UM05182 Ustilago maydis UM05182 N
UM05274 Ustilago maydis UM05274 I
V565_035120 Rhizoctonia solani V565_035120 N
V565_116890 Rhizoctonia solani V565_116890 I
WALSEDRAFT_18221 Wallemia sebi WALSEDRAFT_18221 N