Thhalv10007267m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10007267m.g T229550_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.776 0.667
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.583
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.615 0.438
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.615 0.438
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.615 0.438
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.615 0.438
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.603 0.396
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.438
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007267m Homeodomain 375 425

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

1215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012083 Calypte anna Aan_R012083 I
Afo_R008076 Aptenodytes forsteri Afo_R008076 I
Alligator_sinensis_CCG004258.1 Alligator sinensis Alligator_sinensis_CCG004258.1 I
Brh_R009918 Buceros rhinoceros Brh_R009918 I
Cmyd_10021288 Chelonia mydas Cmyd_10021288 I
ENSAMEG00000004869 Ailuropoda melanoleuca ENSAMEG00000004869 I
ENSAMXG00000000592 Astyanax mexicanus ENSAMXG00000000592 I
ENSAPLG00000011353 Anas platyrhynchos ENSAPLG00000011353 I
ENSCSAG00000011261 Chlorocebus sabaeus ENSCSAG00000011261 I
ENSDNOG00000006678 Dasypus novemcinctus ENSDNOG00000006678 I
ENSDNOG00000018047 Dasypus novemcinctus ENSDNOG00000018047 I
ENSFALG00000004834 Ficedula albicollis ENSFALG00000004834 I
ENSGALG00000013420 Gallus gallus ENSGALG00000013420 I
ENSLACG00000007969 Latimeria chalumnae ENSLACG00000007969 I
ENSLOCG00000016556 Lepisosteus oculatus ENSLOCG00000016556 I
ENSMEUG00000015998 Macropus eugenii ENSMEUG00000015998 I
ENSMODG00000018349 Monodelphis domestica ENSMODG00000018349 I
ENSMPUG00000009407 Mustela putorius furo ENSMPUG00000009407 I
ENSOANG00000001393 Ornithorhynchus anatinus ENSOANG00000001393 I
ENSOARG00000011054 Ovis aries ENSOARG00000011054 I
ENSP00000342307-D1 Bos grunniens ENSP00000342307-D1 I
ENSPANG00000004991 Papio anubis ENSPANG00000004991 I
ENSPPYG00000004153 Pongo abelii ENSPPYG00000004153 I
ENSPSIG00000016445 Pelodiscus sinensis ENSPSIG00000016445 I
ENSSHAG00000013615 Sarcophilus harrisii ENSSHAG00000013615 I
ENSSTOG00000016089 Ictidomys tridecemlineatus ENSSTOG00000016089 I
ENSTGUG00000013153 Taeniopygia guttata ENSTGUG00000013153 I
foxm1 Takifugu rubripes ENSTRUG00000015839 I
foxm1 Tetraodon nigroviridis ENSTNIG00000011394 I
FOXM1 Homo sapiens ENSG00000111206 D
FOXM1 Sus scrofa ENSSSCG00000000739 I
FOXM1 Cavia porcellus ENSCPOG00000015373 I
Foxm1 Rattus norvegicus ENSRNOG00000005936 I
FOXM1 Callithrix jacchus ENSCJAG00000018781 I
FOXM1 Choloepus hoffmanni ENSCHOG00000005195 I
FOXM1 Pteropus vampyrus ENSPVAG00000013227 I
FOXM1 Canis familiaris ENSCAFG00000015642 I
FOXM1 Bos taurus ENSBTAG00000015875 I
FOXM1 Procavia capensis ENSPCAG00000013185 I
foxm1 Xenopus tropicalis XB-GENE-854081 I
FOXM1 Ochotona princeps ENSOPRG00000015416 I
FOXM1 Felis catus ENSFCAG00000025605 I
foxm1 Gasterosteus aculeatus ENSGACG00000019929 I
FOXM1 Echinops telfairi ENSETEG00000019867 I
FOXM1 Gorilla gorilla ENSGGOG00000009402 I
FOXM1 Erinaceus europaeus ENSEEUG00000009221 I
FOXM1 Loxodonta africana ENSLAFG00000002856 I
FOXM1 Equus caballus ENSECAG00000019129 I
Foxm1 Dipodomys ordii ENSDORG00000015227 I
FOXM1 Meleagris gallopavo ENSMGAG00000013924 D
FOXM1 Microcebus murinus ENSMICG00000000100 I
FOXM1 Myotis lucifugus ENSMLUG00000005292 I
foxm1 Danio rerio ENSDARG00000003200 I
FOXM1 Anolis carolinensis ENSACAG00000015333 I
Foxm1 Mus musculus ENSMUSG00000001517 D
FOXM1 Oryctolagus cuniculus ENSOCUG00000002703 I
FOXM1 Otolemur garnettii ENSOGAG00000034635 I
foxm1 Oryzias latipes ENSORLG00000016140 I
foxm1.S Xenopus laevis XB-GENE-854084 I
Gfo_R008440 Geospiza fortis Gfo_R008440 I
Myotis_brandtii_FOXM1_10028675 Myotis brandtii Myotis_brandtii_FOXM1_10028675 I
Pvit_02534 Pogona vitticeps Pvit_02534 I
Tal_R011971 Tyto alba Tal_R011971 I