Thhalv10016349m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10016349m.g T229575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.827 0.804
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.587
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.618 0.457
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.618 0.457
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.618 0.457
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.618 0.457
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10016349m Homeodomain 393 441
Thhalv10016350m Homeodomain 393 441
Thhalv10016351m Homeodomain 393 441

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
17440_YML027W Saccharomyces paradoxus 17440_YML027W I
5231_YDR451C Saccharomyces mikatae 5231_YDR451C I
5532_YDR451C Saccharomyces bayanus 5532_YDR451C I
5594_YDR451C Saccharomyces paradoxus 5594_YDR451C I
CAGL0G07249g Candida glabrata CAGL0G07249g I
CORT_0H00310 Candida orthopsilosis CORT_0H00310 I
CPAG_00635 Candida parapsilosis CPAG_00635 I
JL09_g4323 Pichia kudriavzevii JL09_g4323 I
K437DRAFT_81582 Tilletiaria anomala K437DRAFT_81582 N
KAFR_0C05600 Kazachstania africana KAFR_0C05600 I
Kpol_1004p50 Vanderwaltozyma polyspora Kpol_1004p50 I
Kpol_1023p80 Vanderwaltozyma polyspora Kpol_1023p80 I
MVLG_02993 Microbotryum violaceum MVLG_02993 I
PAS_chr2-1_0784 Komagataella pastoris PAS_chr2-1_0784 I
PGUG_00382 Meyerozyma guilliermondii PGUG_00382 I
PGUG_00382 Candida guilliermondii PGUG_00382 I
PHSY_003201 Pseudozyma hubeiensis PHSY_003201 I
PIIN_05295 Piriformospora indica PIIN_05295 I
PNEG_03146 Pneumocystis murina PNEG_03146 I
PredSwiss_CON591.1 Pneumocystis carinii PredSwiss_CON591.1 I
PSEUBRA_SCAF1g00359 Pseudozyma brasiliensis PSEUBRA_SCAF1g00359 I
SKUD_123402 Saccharomyces kudriavzevii SKUD_123402 I
SOCG_04925 Schizosaccharomyces octosporus SOCG_04925 I
sr11633 Sporisorium reilianum sr11633 I
SU7_2475 Saccharomyces arboricola SU7_2475 I
SU7_2763 Saccharomyces arboricola SU7_2763 I
TBLA_0D01390 Tetrapisispora blattae TBLA_0D01390 I
TDEL_0A04320 Torulaspora delbrueckii TDEL_0A04320 I
TPHA_0D02630 Tetrapisispora phaffii TPHA_0D02630 I
TPHA_0K00360 Tetrapisispora phaffii TPHA_0K00360 I
UHOR_00441 Ustilago hordei UHOR_00441 I
XP_002491722.1 Pichia pastoris XP_002491722.1 I
YALI0_E20449g Yarrowia lipolytica YALI0_E20449g I
YHP1 Saccharomyces cerevisiae YDR451C D
YOX1 Saccharomyces cerevisiae YML027W D
ZBAI_03698 Zygosaccharomyces bailii ZBAI_03698 I
ZBAI_09382 Zygosaccharomyces bailii ZBAI_09382 I
ZYRO0D13596g Zygosaccharomyces rouxii ZYRO0D13596g I