CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Scas_Contig597.15 *(Saccharomyces castellii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Scas_Contig597.15	T230133_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CUP9 M00059_2.00	Saccharomyces cerevisiae	TGACABHW	WDVTGTCA	PBM Badis et al.(2008) CUP9_4508	0.776	0.891
CUP9 M01553_2.00	Saccharomyces cerevisiae	NWGACAYWWH	DWWRTGTCWN	PBM Zhu et al.(2009) Cup9	0.776	0.891
CUP9 M07488_2.00	Saccharomyces cerevisiae	TGACAYAWW	WWTRTGTCA	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0288.1	0.776	0.891
CUP9 M08576_2.00	Saccharomyces cerevisiae	TGACAYAWW	WWTRTGTCA	Misc DeBoer et al.(2011) YPL177C_480	0.776	0.891
TOS8 M02192_2.00	Saccharomyces cerevisiae	NNNTKACGTMW	WKACGTMANNN	PBM Weirauch et al.(2014) pTH5696	0.756	0.745
TOS8 M00057_2.00	Saccharomyces cerevisiae	NNNCRYGNNN	NNNCRYGNNN	PBM Badis et al.(2008) TOS8_2100	0.756	0.745
TOS8 M07486_2.00	Saccharomyces cerevisiae	NWTGACAB	VTGTCAWN	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0408.1	0.756	0.745
TOS8 M08574_2.00	Saccharomyces cerevisiae	NWTGACAB	VTGTCAWN	Misc DeBoer et al.(2011) YGL096W_494	0.756	0.745
CAGL0H02959g M02060_2.00	Candida glabrata	NDTDACRBNN	NNVYGTHAHN	PBM Weirauch et al.(2014) pTH6455	0.626	0.745
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Scas_Contig597.15	Homeodomain	127	184	NNRRSNLPKEMVQILNTWLLNHLQNPYPTSQEKRELLIKTGLTKVQLSNWFINVRRRK

Links
Other Homeodomain family TFs
Other *Saccharomyces castellii* TFs

55 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CHLREDRAFT_135484	Chlamydomonas reinhardtii	CHLREDRAFT_135484	N