CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sjc_0110780
(
Schistosoma japonicum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Sjc_0110780
T230196_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN
NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.691
0.304
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN
NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.691
0.304
VSX1
M04941_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.691
0.304
VSX1
M04944_2.00
Homo sapiens
NTAATTRS
SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.691
0.304
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN
NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.691
0.304
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN
NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.691
0.304
VSX1
M04943_2.00
Homo sapiens
YYAATTRN
NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.691
0.304
VSX1
M04945_2.00
Homo sapiens
NTAATTRG
CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.691
0.304
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN
NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.691
0.304
VAX1
M03168_2.00
Homo sapiens
YTAATKAN
NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.679
0.370
VAX1
M05182_2.00
Homo sapiens
BTAATTRN
NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.679
0.370
VAX1
M05183_2.00
Homo sapiens
BTMATKRN
NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.679
0.370
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000010423
Homeodomain
67
112
RKTRTTFSNCQLNELENNFNRQRYLTPSDRDRIAKHLGLTNTQVKN
Links
Other
Homeodomain
family TFs
Other
Schistosoma japonicum
TFs
1222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_09159
Capronia coronata
A1O1_09159
I
0.000
A1O3_04845
Capronia epimyces
A1O3_04845
I
0.000
A1O5_10900
Cladophialophora psammophila
A1O5_10900
I
0.000
A1O7_09067
Cladophialophora yegresii
A1O7_09067
I
0.000
A1O9_08529
Exophiala aquamarina
A1O9_08529
I
0.000
ACRE_046280
Acremonium chrysogenum
ACRE_046280
I
0.000
AOL_s00004g609
Arthrobotrys oligospora
AOL_s00004g609
I
0.000
AUEXF2481DRAFT_61161
Aureobasidium subglaciale
AUEXF2481DRAFT_61161
N
0.000
BBA_06883
Beauveria bassiana
BBA_06883
I
0.000
Bcin12g04500
Botrytis cinerea
Bcin12g04500
I
0.000
BDDG_06646
Blastomyces dermatitidis
BDDG_06646
I
0.000
CADAFLAG00008989
Aspergillus flavus
CADAFLAG00008989
I
0.000
CADANGAG00013867
Aspergillus niger
CADANGAG00013867
I
0.000
CCM_02994
Cordyceps militaris
CCM_02994
I
0.000
CFIO01_00183
Colletotrichum fioriniae
CFIO01_00183
I
0.000
CGGC5_14397
Colletotrichum gloeosporioides
CGGC5_14397
I
0.000
CH063_11489
Colletotrichum higginsianum
CH063_11489
I
0.000
CHGG_04711
Chaetomium globosum
CHGG_04711
I
0.000
CIMG_09213
Coccidioides immitis
CIMG_09213
I
0.000
Cob_02846
Colletotrichum orbiculare
Cob_02846
I
0.000
CPC735_016280
Coccidioides posadasii
CPC735_016280
I
0.000
CPUR_05329
Claviceps purpurea
CPUR_05329
I
0.000
CSUB01_05654
Colletotrichum sublineola
CSUB01_05654
I
0.000
CTHT_0032940
Chaetomium thermophilum
CTHT_0032940
I
0.000
EPUS_07480
Endocarpon pusillum
EPUS_07480
I
0.000
estExt_Genewise1.C_31155
Mycosphaerella fijiensis
estExt_Genewise1.C_31155
I
0.000
estExt_Genewise1.C_31209
Neurospora discreta
estExt_Genewise1.C_31209
I
0.000
EURHEDRAFT_481352
Aspergillus ruber
EURHEDRAFT_481352
I
0.000
F503_02919
Ophiostoma piceae uamh
F503_02919
I
0.000
FFUJ_04567
Fusarium fujikuroi
FFUJ_04567
I
0.000
fgenesh1_pg.sca_82_chr10_2_0000336
Nectria haematococca
fgenesh1_pg.sca_82_chr10_2_0000336
I
0.000
FGRRES_16471_M
Fusarium graminearum
FGRRES_16471_M
I
0.000
FOXG_06396
Fusarium oxysporum
FOXG_06396
I
0.000
FPSE_07163
Fusarium pseudograminearum
FPSE_07163
I
0.000
FVEG_04246
Fusarium verticillioides
FVEG_04246
I
0.000
G647_08026
Cladophialophora carrionii
G647_08026
I
0.000
GGTG_08450
Gaeumannomyces graminis
GGTG_08450
I
0.000
GLRG_07227
Colletotrichum graminicola
GLRG_07227
I
0.000
GMDG_07670
Pseudogymnoascus destructans
GMDG_07670
I
0.000
GSTUM_00002283001
Tuber melanosporum
GSTUM_00002283001
I
0.000
H072_2295
Dactylellina haptotyla
H072_2295
I
0.000
H101_04520
Trichophyton interdigitale
H101_04520
I
0.000
HMPREF1541_10049
Cyphellophora europaea
HMPREF1541_10049
I
0.000
HMPREF1624_06090
Sporothrix schenckii
HMPREF1624_06090
I
0.000
M437DRAFT_55860
Aureobasidium melanogenum
M437DRAFT_55860
I
0.000
M438DRAFT_332335
Aureobasidium pullulans
M438DRAFT_332335
N
0.000
MAC_06769
Metarhizium acridum
MAC_06769
I
0.000
MAJ_02884
Metarhizium majus
MAJ_02884
I
0.000
MAM_04298
Metarhizium album
MAM_04298
I
0.000
MANI_017308
Metarhizium anisopliae
MANI_017308
I
0.000
MAPG_05250
Magnaporthe poae
MAPG_05250
I
0.000
MBM_00857
Marssonina brunnea
MBM_00857
I
0.000
MBR_01966
Metarhizium brunneum
MBR_01966
I
0.000
MCYG_05152
Microsporum canis
MCYG_05152
I
0.000
MGG_01518
Magnaporthe oryzae
MGG_01518
I
0.000
MGU_02647
Metarhizium guizhouense
MGU_02647
I
0.000
MGYG_06191
Microsporum gypseum
MGYG_06191
I
0.000
MYCFIDRAFT_95405
Pseudocercospora fijiensis
MYCFIDRAFT_95405
I
0.000
MYCTH_2298994
Myceliophthora thermophila
MYCTH_2298994
I
0.000
NechaG85733
Fusarium solani
NechaG85733
I
0.000
NEUTE1DRAFT_78894
Neurospora tetrasperma
NEUTE1DRAFT_78894
I
0.000
nirA
Aspergillus nidulans
CADANIAG00002651
D
0.000
nit-4
Neurospora crassa
NCU08294
D
0.000
OCS_03410
Ophiocordyceps sinensis
OCS_03410
I
0.000
OIDMADRAFT_145878
Oidiodendron maius
OIDMADRAFT_145878
I
0.000
Pc21g07150
Penicillium chrysogenum
Pc21g07150
I
0.000
PCH_Pc21g07150
Penicillium rubens
PCH_Pc21g07150
I
0.000
PDE_07492
Penicillium oxalicum
PDE_07492
I
0.000
PEX1_054820
Penicillium expansum
PEX1_054820
I
0.000
PFICI_05113
Pestalotiopsis fici
PFICI_05113
I
0.000
PITC_074990
Penicillium italicum
PITC_074990
I
0.000
PODANS_6_3660
Podospora anserina
PODANS_6_3660
I
0.000
PV04_09653
Capronia semiimmersa
PV04_09653
I
0.000
PV05_00256
Exophiala xenobiotica
PV05_00256
I
0.000
PV06_07400
Exophiala oligosperma
PV06_07400
I
0.000
PV07_00058
Cladophialophora immunda
PV07_00058
I
0.000
PV08_01595
Exophiala spinifera
PV08_01595
I
0.000
PV09_06735
Verruconis gallopava
PV09_06735
I
0.000
PV10_04668
Exophiala mesophila
PV10_04668
I
0.000
PV11_03250
Exophiala sideris
PV11_03250
I
0.000
S40285_05835
Stachybotrys chlorohalonata
S40285_05835
I
0.000
S40288_02558
Stachybotrys chartarum
S40288_02558
I
0.000
SAPIO_CDS7494
Scedosporium apiospermum
SAPIO_CDS7494
I
0.000
SBOR_1902
Sclerotinia borealis
SBOR_1902
I
0.000
SEPMUDRAFT_151303
Sphaerulina musiva
SEPMUDRAFT_151303
I
0.000
SMAC_00922
Sordaria macrospora
SMAC_00922
I
0.000
SNOG_08725
Stagonospora nodorum
SNOG_08725
N
0.000
SNOG_08725
Phaeosphaeria nodorum
SNOG_08725
N
0.000
SPBR_00474
Sporothrix brasiliensis
SPBR_00474
I
0.000
SS1G_08630
Sclerotinia sclerotiorum
SS1G_08630
I
0.000
TEQG_04623
Trichophyton equinum
TEQG_04623
I
0.000
TESG_03837
Trichophyton tonsurans
TESG_03837
I
0.000
THITE_2115412
Thielavia terrestris
THITE_2115412
I
0.000
TRIATDRAFT_226133
Trichoderma atroviride
TRIATDRAFT_226133
N
0.000
TRIVIDRAFT_154783
Trichoderma virens
TRIVIDRAFT_154783
N
0.000
U727_00434221541
Penicillium solitum
U727_00434221541
I
0.000
UCRPA7_467
Togninia minima
UCRPA7_467
I
0.000
V499_08062
Pseudogymnoascus pannorum
V499_08062
I
0.000
VDAG_08005
Verticillium dahliae
VDAG_08005
I
0.000
VDBG_01257
Verticillium albo atrum
VDBG_01257
I
0.000
VDBG_01257
Verticillium alfalfae
VDBG_01257
I
0.000
VHEMI00532
Torrubiella hemipterigena
VHEMI00532
I
0.000
X797_005996
Metarhizium robertsii
X797_005996
I
0.000
Z517_01923
Fonsecaea pedrosoi
Z517_01923
I
0.000
Z518_03222
Rhinocladiella mackenziei
Z518_03222
I
0.000
Z519_11440
Cladophialophora bantiana
Z519_11440
I
0.000