chr2.CM0304.440.nc (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 chr2.CM0304.440.nc T230807_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25034.1
M01254_2.00 		Cannabis sativa
NNTGACRKBN
NVMYGTCANN		 PBM
Lambert et al.(2019)
pTH11259 		0.731 0.673
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.714 0.827
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.714 0.827
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.711 0.904
HOS66
M02156_2.00 		Oryza sativa
NNNNDHNN
NNDHNNNN		 PBM
Weirauch et al.(2014)
pTH8332 		0.706 0.942
GRMZM2G087741
M02138_2.00 		Zea mays
NNTGACRKCN
NGMYGTCANN		 PBM
Weirauch et al.(2014)
pTH5816 		0.636 0.692
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0304.440.nc Homeodomain 211 265

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

315 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007961 Ailuropoda melanoleuca ENSAMEG00000007961 I 0.000
ENSAMEG00000020055 Ailuropoda melanoleuca ENSAMEG00000020055 I 0.000
ENSCPOG00000013612 Cavia porcellus ENSCPOG00000013612 I 0.000
ENSCSAG00000000410 Chlorocebus sabaeus ENSCSAG00000000410 I 0.000
ENSCSAG00000000606 Chlorocebus sabaeus ENSCSAG00000000606 I 0.000
ENSLACG00000003439 Latimeria chalumnae ENSLACG00000003439 I 0.000
ENSLACG00000006290 Latimeria chalumnae ENSLACG00000006290 I 0.000
ENSLACG00000008134 Latimeria chalumnae ENSLACG00000008134 I 0.000
ENSLACG00000010942 Latimeria chalumnae ENSLACG00000010942 I 0.000
ENSMICG00000009416 Microcebus murinus ENSMICG00000009416 I 0.000
ENSMMUG00000006958 Macaca mulatta ENSMMUG00000006958 I 0.000
ENSMPUG00000012306 Mustela putorius furo ENSMPUG00000012306 I 0.000
ENSMPUG00000019104 Mustela putorius furo ENSMPUG00000019104 I 0.000
ENSOARG00000000411 Ovis aries ENSOARG00000000411 I 0.000
ENSOARG00000008312 Ovis aries ENSOARG00000008312 I 0.000
ENSOGAG00000029206 Otolemur garnettii ENSOGAG00000029206 I 0.000
ENSP00000317170 Macaca fascicularis ENSP00000317170 I 0.000
ENSP00000317170-D1 Bos grunniens ENSP00000317170-D1 I 0.000
ENSP00000389989 Macaca fascicularis ENSP00000389989 I 0.000
ENSP00000389989-D1 Bos grunniens ENSP00000389989-D1 I 0.000
ENSPANG00000003755 Papio anubis ENSPANG00000003755 I 0.000
ENSPPYG00000003796 Pongo abelii ENSPPYG00000003796 I 0.000
ENSPPYG00000014930 Pongo abelii ENSPPYG00000014930 I 0.000
ENSSHAG00000004352 Sarcophilus harrisii ENSSHAG00000004352 I 0.000
ENSSTOG00000026474 Ictidomys tridecemlineatus ENSSTOG00000026474 I 0.000
ENSSTOG00000028053 Ictidomys tridecemlineatus ENSSTOG00000028053 I 0.000
JRKL Felis catus ENSFCAG00000007462 I 0.000
Jrkl Rattus norvegicus ENSRNOG00000047133 I 0.000
JRKL Ochotona princeps ENSOPRG00000010096 I 0.000
JRKL Vicugna pacos ENSVPAG00000008344 I 0.000
JRKL Loxodonta africana ENSLAFG00000032743 I 0.000
JRKL Oryctolagus cuniculus ENSOCUG00000024211 I 0.000
JRKL Erinaceus europaeus ENSEEUG00000014957 I 0.000
JRKL Ornithorhynchus anatinus ENSOANG00000014711 I 0.000
Jrkl Mus musculus ENSMUSG00000079083 I 0.000
JRKL Canis familiaris ENSCAFG00000004081 I 0.000
JRKL Bos taurus ENSBTAG00000037488 I 0.000
JRKL Homo sapiens ENSG00000183340 I 0.000
JRKL Monodelphis domestica ENSMODG00000024414 I 0.000
JRKL Gorilla gorilla ENSGGOG00000000360 I 0.000
JRKL Macaca mulatta ENSMMUG00000003821 I 0.000
JRKL Myotis lucifugus ENSMLUG00000025663 I 0.000
TIGD2 Canis familiaris ENSCAFG00000009844 I 0.000
TIGD2 Bos taurus ENSBTAG00000015265 I 0.000
Tigd2 Rattus norvegicus ENSRNOG00000038449 I 0.000
TIGD2 Otolemur garnettii ENSOGAG00000032052 I 0.000
Tigd2 Mus musculus ENSMUSG00000049232 I 0.000
TIGD2 Homo sapiens ENSG00000180346 I 0.000
TIGD2 Monodelphis domestica ENSMODG00000019223 D 0.000
TIGD2 Gorilla gorilla ENSGGOG00000026736 I 0.000