chr2.LjT39I02.10.nc (Lotus japonicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 chr2.LjT39I02.10.nc T230811_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.862 0.911
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.862 0.911
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.846 0.929
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.846 0.929
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.724 0.875
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.724 0.875
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.711 0.625
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.711 0.625
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.711 0.625
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.709 0.661
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.693 0.839
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.677 0.786
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.677 0.786
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.677 0.786
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.677 0.786
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.663 0.786
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.663 0.786
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.663 0.786
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.663 0.768
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.657 0.786
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.657 0.786
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.657 0.786
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.657 0.786
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.618 0.625
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.618 0.625
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.606 0.518
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT39I02.10.nc Homeodomain 105 160

Links

Other Homeodomain family TFs
Other Lotus japonicus TFs

780 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC212859.3_FG008 Zea mays AC212859.3_FG008 N 0.000
BGIOSGA014649 Oryza indica BGIOSGA014649 I 0.000
BGIOSGA027807 Oryza indica BGIOSGA027807 N 0.000
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I 0.000
BRADI3G13117 Brachypodium distachyon BRADI3G13117 N 0.000
BRADI5G27467 Brachypodium distachyon BRADI5G27467 N 0.000
e_gw1.70.85.1 Physcomitrella patens e_gw1.70.85.1 N 0.000
F775_00942 Aegilops tauschii F775_00942 N 0.000
F775_07224 Aegilops tauschii F775_07224 I 0.000
F775_12735 Aegilops tauschii F775_12735 N 0.000
F775_16517 Aegilops tauschii F775_16517 N 0.000
F775_52611 Aegilops tauschii F775_52611 N 0.000
GRMZM2G041668 Zea mays GRMZM2G041668 I 0.000
GRMZM2G048826 Zea mays GRMZM2G048826 N 0.000
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.000
GRMZM2G178998 Zea mays GRMZM2G178998 I 0.000
GRMZM2G440219 Zea mays GRMZM2G440219 I 0.000
GSMUA_Achr3G22360_001 Musa acuminata GSMUA_Achr3G22360_001 N 0.000
LPERR04G16200 Leersia perrieri LPERR04G16200 I 0.000
LPERR08G00380 Leersia perrieri LPERR08G00380 N 0.000
MLOC_19933 Hordeum vulgare MLOC_19933 N 0.000
MLOC_53086 Hordeum vulgare MLOC_53086 I 0.000
MLOC_66083 Hordeum vulgare MLOC_66083 N 0.000
MLOC_67250 Hordeum vulgare MLOC_67250 N 0.000
OB04G27030 Oryza brachyantha OB04G27030 I 0.000
OB08G10370 Oryza brachyantha OB08G10370 N 0.000
OBART04G20020 Oryza barthii OBART04G20020 I 0.000
OBART08G00290 Oryza barthii OBART08G00290 N 0.000
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I 0.000
OGLUM08G00350 Oryza glumaepatula OGLUM08G00350 N 0.000
OMERI03G30800 Oryza meridionalis OMERI03G30800 I 0.000
OMERI08G00600 Oryza meridionalis OMERI08G00600 N 0.000
ONIVA04G18230 Oryza nivara ONIVA04G18230 I 0.000
ONIVA08G00280 Oryza nivara ONIVA08G00280 N 0.000
OPUNC04G17680 Oryza punctata OPUNC04G17680 I 0.000
OPUNC08G00360 Oryza punctata OPUNC08G00360 N 0.000
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I 0.000
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I 0.000
ORUFI08G00330 Oryza rufipogon ORUFI08G00330 N 0.000
OS04G0536500 Oryza sativa OS04G0536500 I 0.000
OS08G0103900 Oryza sativa OS08G0103900 N 0.000
Pavir.Da02426 Panicum virgatum Pavir.Da02426 I 0.000
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I 0.000
Pavir.J07126 Panicum virgatum Pavir.J07126 I 0.000
Pavir.J20890 Panicum virgatum Pavir.J20890 N 0.000
Pavir.J26987 Panicum virgatum Pavir.J26987 I 0.000
Pavir.J31179 Panicum virgatum Pavir.J31179 N 0.000
Sb06g034010 Sorghum bicolor Sb06g034010 N 0.000
Sb07g000470 Sorghum bicolor Sb07g000470 N 0.000
Sb10g000460 Sorghum bicolor Sb10g000460 I 0.000
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I 0.000
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I 0.000
Si006829m.g Setaria italica Si006829m.g I 0.000
Si010504m.g Setaria italica Si010504m.g I 0.000
Si014149m.g Setaria italica Si014149m.g N 0.000
Si022723m.g Setaria italica Si022723m.g I 0.000
Traes_2AL_61C5A2D03 Triticum aestivum Traes_2AL_61C5A2D03 N 0.000
Traes_2AL_8EE7F34F6 Triticum aestivum Traes_2AL_8EE7F34F6 N 0.000
Traes_2AL_C0670BBDD Triticum aestivum Traes_2AL_C0670BBDD N 0.000
Traes_2AL_CB84F42D2 Triticum aestivum Traes_2AL_CB84F42D2 N 0.000
Traes_2AL_F001B4F26 Triticum aestivum Traes_2AL_F001B4F26 N 0.000
Traes_2BL_0AED4E377 Triticum aestivum Traes_2BL_0AED4E377 N 0.000
Traes_2BL_CBFB7D720 Triticum aestivum Traes_2BL_CBFB7D720 N 0.000
Traes_2DL_607AD3522 Triticum aestivum Traes_2DL_607AD3522 N 0.000
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I 0.000
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I 0.000
Traes_7DL_DF64397D7 Triticum aestivum Traes_7DL_DF64397D7 N 0.000
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I 0.000
TRIUR3_06372 Triticum urartu TRIUR3_06372 N 0.000
TRIUR3_08851 Triticum urartu TRIUR3_08851 I 0.000
TRIUR3_10969 Triticum urartu TRIUR3_10969 N 0.000
TRIUR3_10971 Triticum urartu TRIUR3_10971 N 0.000
TRIUR3_24879 Triticum urartu TRIUR3_24879 N 0.000