AATE016624 (Anopheles atroparvus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 AATE016624 T231302_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.827 0.652
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.827 0.652
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.827 0.652
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.827 0.652
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.827 0.652
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.827 0.652
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.827 0.652
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.827 0.652
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.377 1.000
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.377 1.000
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.377 1.000
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.377 1.000
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AATE016624-PA Homeodomain 420 465

Links

Other Homeodomain family TFs
Other Anopheles atroparvus TFs

1307 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_Genewise1Plus.C_10167 Phytophthora capsici estExt_Genewise1Plus.C_10167 N 0.000
F443_04245 Phytophthora parasitica F443_04245 N 0.000
fgenesh_masked-piw_contig_2465-abinit-gene-0.3 Pythium iwayamai fgenesh_masked-piw_contig_2465-abinit-gene-0.3 N 0.000
fgenesh_scip_prom.28083.3669 Phytophthora lateralis fgenesh_scip_prom.28083.3669 N 0.000
fgenesh_scip_prom.46568.5994 Phytophthora kernoviae fgenesh_scip_prom.46568.5994 N 0.000
HpaG801013 Hyaloperonospora arabidopsidis HpaG801013 N 0.000
maker-pir_contig_1506-fgenesh-gene-0.0 Pythium irregulare maker-pir_contig_1506-fgenesh-gene-0.0 N 0.000
maker-piw_contig_3463-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_3463-fgenesh-gene-0.0 N 0.000
maker-pve_contig_182-fgenesh-gene-0.7 Pythium vexans maker-pve_contig_182-fgenesh-gene-0.7 N 0.000
Phyra72797 Phytophthora ramorum Phyra72797 N 0.000
Physo142553 Phytophthora sojae Physo142553 N 0.000
PITG_00514 Phytophthora infestans PITG_00514 N 0.000