BGLB003173 (Biomphalaria glabrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 BGLB003173 T232405_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX3
M08132_2.00 		Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1114.1 		0.600 0.510
PBX3
M07971_2.00 		Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha 		0.600 0.510
PBX3
M09155_2.00 		Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH		 Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A 		0.600 0.510
PBX3
M09560_2.00 		Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN		 Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465 		0.600 0.510
PBX3
M10732_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX3_02 		0.600 0.510
PBX3
M10733_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX3_03 		0.600 0.510
PBX3
M10734_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX3_04 		0.600 0.510
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGLB003173-PA Homeodomain 85 130
BGLB003173-PA Homeodomain 128 187

Links

Other Homeodomain family TFs
Other Biomphalaria glabrata TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29647.m002101 Ricinus communis 29647.m002101 I
AMTR_s00025p00048410 Amborella trichopoda AMTR_s00025p00048410 I
Aquca_054_00130 Aquilegia coerulea Aquca_054_00130 I
Bostr.25463s0338 Boechera stricta Bostr.25463s0338 I
BRADI1G54070 Brachypodium distachyon BRADI1G54070 I
Cagra.1664s0001 Capsella grandiflora Cagra.1664s0001 I
Carubv10002462m.g Capsella rubella Carubv10002462m.g I
cassava24625.valid.m1 Manihot esculenta cassava24625.valid.m1 I
cassava29522.valid.m1 Manihot esculenta cassava29522.valid.m1 I
Ca_07836 Cicer arietinum Ca_07836 I
Ciclev10019118m.g Citrus clementina Ciclev10019118m.g I
Eucgr.H01487 Eucalyptus grandis Eucgr.H01487 I
gene27827-v1.0-hybrid Fragaria vesca gene27827-v1.0-hybrid I
GLYMA02G16670 Glycine max GLYMA02G16670 I
GLYMA10G03140 Glycine max GLYMA10G03140 I
Gorai.004G215900 Gossypium raimondii Gorai.004G215900 I
Gorai.007G136400 Gossypium raimondii Gorai.007G136400 I
GSMUA_Achr3G17620_001 Musa acuminata GSMUA_Achr3G17620_001 I
GSMUA_Achr6G21490_001 Musa acuminata GSMUA_Achr6G21490_001 I
LPERR07G06180 Leersia perrieri LPERR07G06180 I
MDP0000225680 Malus domestica MDP0000225680 I
MDP0000617077 Malus domestica MDP0000617077 I
MTR_1g072320 Medicago truncatula MTR_1g072320 I
OBART07G07130 Oryza barthii OBART07G07130 I
OMERI07G05880 Oryza meridionalis OMERI07G05880 I
ONIVA07G05400 Oryza nivara ONIVA07G05400 I
orange1.1g037798m.g Citrus sinensis orange1.1g037798m.g I
PGSC0003DMG400012891 Solanum tuberosum PGSC0003DMG400012891 I
PK09702.1 Cannabis sativa PK09702.1 D
Pm020164 Prunus mume Pm020164 I
POPTR_0005s23020 Populus trichocarpa POPTR_0005s23020 I
PRUPE_ppa002884m2g Prunus persica PRUPE_ppa002884m2g I
SapurV1A.0076s0350 Salix purpurea SapurV1A.0076s0350 I
Sb02g006390 Sorghum bicolor Sb02g006390 I
Si029106m.g Setaria italica Si029106m.g I
Solyc09g065100.1 Solanum lycopersicum Solyc09g065100.1 I
TCM_004403 Theobroma cacao TCM_004403 I
Thhalv10028584m.g Eutrema salsugineum Thhalv10028584m.g I
TT8 Vitis vinifera VIT_07s0104g00090 I
TT8 Arabidopsis lyrata fgenesh2_kg.6__2968__AT4G09820.1 I
TT8 Arabidopsis thaliana AT4G09820 I