DME_0000433701 (Dracunculus medinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 DME_0000433701 T233701_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.719 0.304
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.719 0.304
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.719 0.304
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.706 0.370
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.706 0.370
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.706 0.370
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.706 0.370
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.706 0.370
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.706 0.370
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.706 0.370
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.706 0.370
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.706 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
DME_0000433701-mRNA-1 Homeodomain 78 123

Links

Other Homeodomain family TFs
Other Dracunculus medinensis TFs

1222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m013673 Ricinus communis 30170.m013673 N 0.000
30190.m011066 Ricinus communis 30190.m011066 I 0.000
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I 0.000
AMTR_s00065p00092420 Amborella trichopoda AMTR_s00065p00092420 N 0.000
Aquca_006_00049 Aquilegia coerulea Aquca_006_00049 N 0.000
Aquca_037_00140 Aquilegia coerulea Aquca_037_00140 N 0.000
AtGRF3 Arabidopsis lyrata fgenesh2_kg.4__1676__AT2G36400.1 N 0.000
AtGRF7 Vitis vinifera VIT_16s0098g01080 N 0.000
BGIOSGA013499 Oryza indica BGIOSGA013499 N 0.000
BGIOSGA025662 Oryza indica BGIOSGA025662 N 0.000
Bo4g186220 Brassica oleracea Bo4g186220 N 0.000
Bostr.23794s0452 Boechera stricta Bostr.23794s0452 N 0.000
BRADI1G09900 Brachypodium distachyon BRADI1G09900 N 0.000
BRADI1G28400 Brachypodium distachyon BRADI1G28400 N 0.000
BRADI2G14320 Brachypodium distachyon BRADI2G14320 N 0.000
Cagra.0228s0030 Capsella grandiflora Cagra.0228s0030 N 0.000
Carubv10025172m.g Capsella rubella Carubv10025172m.g N 0.000
cassava22415.valid.m1 Manihot esculenta cassava22415.valid.m1 N 0.000
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.000
Ca_00772 Cicer arietinum Ca_00772 N 0.000
Ciclev10011856m.g Citrus clementina Ciclev10011856m.g N 0.000
Ciclev10022033m.g Citrus clementina Ciclev10022033m.g I 0.000
Cla017990 Citrullus lanatus Cla017990 N 0.000
Cla022992 Citrullus lanatus Cla022992 N 0.000
Cucsa.378420 Cucumis sativus Cucsa.378420 N 0.000
Cucsa.395430 Cucumis sativus Cucsa.395430 N 0.000
Eucgr.F00097 Eucalyptus grandis Eucgr.F00097 N 0.000
evm.TU.supercontig_5.63 Carica papaya evm.TU.supercontig_5.63 N 0.000
F775_29935 Aegilops tauschii F775_29935 N 0.000
GLYMA03G35010 Glycine max GLYMA03G35010 N 0.000
GLYMA04G40880 Glycine max GLYMA04G40880 N 0.000
GLYMA06G13960 Glycine max GLYMA06G13960 N 0.000
GLYMA19G37740 Glycine max GLYMA19G37740 N 0.000
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.000
Gorai.005G098700 Gossypium raimondii Gorai.005G098700 N 0.000
Gorai.008G241800 Gossypium raimondii Gorai.008G241800 I 0.000
Gorai.009G222200 Gossypium raimondii Gorai.009G222200 N 0.000
Gorai.009G277500 Gossypium raimondii Gorai.009G277500 N 0.000
Gorai.010G027700 Gossypium raimondii Gorai.010G027700 N 0.000
GRF11 Oryza sativa OS07G0467500 N 0.000
GRF3 Arabidopsis thaliana AT2G36400 N 0.000
GRMZM2G004619 Zea mays GRMZM2G004619 N 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM2G096709 Zea mays GRMZM2G096709 N 0.000
GSMUA_Achr3G15140_001 Musa acuminata GSMUA_Achr3G15140_001 N 0.000
GSMUA_Achr7G27480_001 Musa acuminata GSMUA_Achr7G27480_001 N 0.000
GSMUA_Achr8G04970_001 Musa acuminata GSMUA_Achr8G04970_001 N 0.000
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N 0.000
LPERR03G27480 Leersia perrieri LPERR03G27480 N 0.000
LPERR07G11440 Leersia perrieri LPERR07G11440 N 0.000
mgf001554m Mimulus guttatus mgf001554m N 0.000
MLOC_70581 Hordeum vulgare MLOC_70581 N 0.000
MTR_7g104050 Medicago truncatula MTR_7g104050 N 0.000
OB07G19720 Oryza brachyantha OB07G19720 N 0.000
OBART03G32870 Oryza barthii OBART03G32870 N 0.000
OBART07G13680 Oryza barthii OBART07G13680 N 0.000
OGLUM03G32510 Oryza glumaepatula OGLUM03G32510 N 0.000
OGLUM07G12780 Oryza glumaepatula OGLUM07G12780 N 0.000
OLONG_025015 Oryza longistaminata OLONG_025015 N 0.000
OMERI03G29560 Oryza meridionalis OMERI03G29560 N 0.000
OMERI08G17030 Oryza meridionalis OMERI08G17030 N 0.000
ONIVA03G34380 Oryza nivara ONIVA03G34380 N 0.000
ONIVA07G11690 Oryza nivara ONIVA07G11690 N 0.000
OPUNC03G30000 Oryza punctata OPUNC03G30000 N 0.000
OPUNC07G12320 Oryza punctata OPUNC07G12320 N 0.000
ORGLA03G0298100 Oryza glaberrima ORGLA03G0298100 N 0.000
ORGLA07G0115500 Oryza glaberrima ORGLA07G0115500 N 0.000
ORUFI03G34250 Oryza rufipogon ORUFI03G34250 N 0.000
ORUFI07G13880 Oryza rufipogon ORUFI07G13880 N 0.000
OS03G0729500 Oryza sativa OS03G0729500 N 0.000
Pavir.Ba01449 Panicum virgatum Pavir.Ba01449 N 0.000
Pavir.Bb02610 Panicum virgatum Pavir.Bb02610 N 0.000
PDK_20s1348362g001 Phoenix dactylifera PDK_20s1348362g001 N 0.000
PGSC0003DMG400004942 Solanum tuberosum PGSC0003DMG400004942 N 0.000
PK18842.1 Cannabis sativa PK18842.1 N 0.000
Pm005437 Prunus mume Pm005437 N 0.000
POPTR_0002s11590 Populus trichocarpa POPTR_0002s11590 N 0.000
POPTR_0014s01320 Populus trichocarpa POPTR_0014s01320 N 0.000
PRUPE_ppa019623mg Prunus persica PRUPE_ppa019623mg N 0.000
SapurV1A.0004s0240 Salix purpurea SapurV1A.0004s0240 N 0.000
SapurV1A.0532s0070 Salix purpurea SapurV1A.0532s0070 N 0.000
SapurV1A.3102s0020 Salix purpurea SapurV1A.3102s0020 N 0.000
Sb02g032860 Sorghum bicolor Sb02g032860 N 0.000
Si030809m.g Setaria italica Si030809m.g N 0.000
Solyc04g077510.2 Solanum lycopersicum Solyc04g077510.2 N 0.000
TCM_016120 Theobroma cacao TCM_016120 I 0.000
TCM_022490 Theobroma cacao TCM_022490 N 0.000
TCM_034655 Theobroma cacao TCM_034655 N 0.000
Thhalv10016778m.g Eutrema salsugineum Thhalv10016778m.g N 0.000
Traes_2AS_CA4D79100 Triticum aestivum Traes_2AS_CA4D79100 N 0.000
Traes_2BS_E3CBE0B73 Triticum aestivum Traes_2BS_E3CBE0B73 N 0.000
Traes_2DL_243DA9D84 Triticum aestivum Traes_2DL_243DA9D84 N 0.000
TRIUR3_26160 Triticum urartu TRIUR3_26160 N 0.000
VIT_18s0001g08650 Vitis vinifera VIT_18s0001g08650 N 0.000