GPLIN_001433700 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_001433700 T234074_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.865 0.947
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.865 0.947
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.865 0.947
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.865 0.930
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.930
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.865 0.912
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.865 0.912
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.865 0.912
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.865 0.912
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.865 0.912
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.865 0.912
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.865 0.912
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.865 0.912
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.865 0.912
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.865 0.912
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.865 0.912
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.865 0.912
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.865 0.912
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.865 0.912
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.820 0.930
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.820 0.930
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.820 0.930
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.820 0.930
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.820 0.930
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.813 0.895
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.813 0.895
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.675 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001433700 Homeodomain 348 407

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_08411 Capronia coronata A1O1_08411 I
A1O3_03427 Capronia epimyces A1O3_03427 I
A1O5_00135 Cladophialophora psammophila A1O5_00135 I
A1O7_03498 Cladophialophora yegresii A1O7_03498 I
A1O9_03221 Exophiala aquamarina A1O9_03221 I
AAEL010565 Aedes aegypti AAEL010565 I
AB07947.1 Alternaria brassicicola AB07947.1 I
ACLA_008900 Aspergillus clavatus CADACLAG00000976 I
AFUA_5G05600 Aspergillus fumigatus CADAFUAG00006210 I
ANIA_08858 Aspergillus nidulans CADANIAG00006192 I
ARB_00880 Arthroderma benhamiae ARB_00880 I
ATEG_09469 Aspergillus terreus CADATEAG00006001 I
AUEXF2481DRAFT_3444 Aureobasidium subglaciale AUEXF2481DRAFT_3444 I
BAUCODRAFT_451965 Baudoinia compniacensis BAUCODRAFT_451965 I
BBA_04116 Beauveria bassiana BBA_04116 I
Bcin03g02390 Botrytis cinerea Bcin03g02390 I
BDDG_09302 Blastomyces dermatitidis BDDG_09302 I
CADAFLAG00010803 Aspergillus flavus CADAFLAG00010803 I
CADAORAG00004109 Aspergillus oryzae CADAORAG00004109 I
CANTEDRAFT_132311 Candida tenuis CANTEDRAFT_132311 I
CaO19.12316 Candida albicans CaO19.12316 I
CaO19.4853 Candida albicans CaO19.4853 I
CCM_02646 Cordyceps militaris CCM_02646 I
CD36_09290 Candida dubliniensis CD36_09290 I
CGGC5_1850 Colletotrichum gloeosporioides CGGC5_1850 I
CH063_10052 Colletotrichum higginsianum CH063_10052 I
CHGG_03283 Chaetomium globosum CHGG_03283 I
CIMG_06369 Coccidioides immitis CIMG_06369 I
CMQ_2924 Grosmannia clavigera CMQ_2924 I
Cob_10099 Colletotrichum orbiculare Cob_10099 I
COCC4DRAFT_190022 Bipolaris maydis COCC4DRAFT_190022 I
COCCADRAFT_104200 Bipolaris zeicola COCCADRAFT_104200 I
COCMIDRAFT_85791 Bipolaris oryzae COCMIDRAFT_85791 I
COCSADRAFT_82560 Bipolaris sorokiniana COCSADRAFT_82560 I
COCVIDRAFT_108808 Bipolaris victoriae COCVIDRAFT_108808 I
CORT_0A03490 Candida orthopsilosis CORT_0A03490 I
CPAG_02650 Candida parapsilosis CPAG_02650 I
CPC735_028750 Coccidioides posadasii CPC735_028750 I
CPIJ007172 Culex quinquefasciatus CPIJ007172 I
CpipJ_CPIJ007172 Culex pipiens CpipJ_CPIJ007172 I
CPUR_04750 Claviceps purpurea CPUR_04750 I
CSUB01_05644 Colletotrichum sublineola CSUB01_05644 I
CTHT_0023230 Chaetomium thermophilum CTHT_0023230 I
CTRG_03373 Candida tropicalis CTRG_03373 I
DEHA2F11308g Debaryomyces hansenii DEHA2F11308g I
DOTSEDRAFT_72733 Dothistroma septosporum DOTSEDRAFT_72733 I
EPUS_04029 Endocarpon pusillum EPUS_04029 I
estExt_fgenesh1_pg.C_70047 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_70047 I
estExt_fgenesh1_pg.C_chr_80261 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_80261 I
estExt_fgenesh1_pm.C_sca_3_chr4_2_00404 Nectria haematococca estExt_fgenesh1_pm.C_sca_3_chr4_2_00404 I
EURHEDRAFT_407493 Aspergillus ruber EURHEDRAFT_407493 I
EV44_g6121 Erysiphe necator EV44_g6121 I
e_gw1.15.387.1 Mycosphaerella fijiensis e_gw1.15.387.1 I
FFUJ_02919 Fusarium fujikuroi FFUJ_02919 I
fgenesh1_pg.00162_#_217 Aspergillus carbonarius fgenesh1_pg.00162_#_217 I
fgenesh2_pg.C_scaffold_5000694 Neurospora discreta fgenesh2_pg.C_scaffold_5000694 I
FOXG_01874 Fusarium oxysporum FOXG_01874 I
FVEG_08252 Fusarium verticillioides FVEG_08252 I
G210_5562 Candida maltosa G210_5562 N
G647_04884 Cladophialophora carrionii G647_04884 I
GGTG_08235 Gaeumannomyces graminis GGTG_08235 I
GLRG_00119 Colletotrichum graminicola GLRG_00119 I
GMDG_00792 Pseudogymnoascus destructans GMDG_00792 I
GSTUM_00006159001 Tuber melanosporum GSTUM_00006159001 I
H101_00911 Trichophyton interdigitale H101_00911 I
H102_04682 Trichophyton rubrum H102_04682 I
H105_04703 Trichophyton soudanense H105_04703 I
HCBG_02171 Histoplasma capsulatum HCBG_02171 I
HMPREF1120_05555 Exophiala dermatitidis HMPREF1120_05555 I
LELG_00412 Lodderomyces elongisporus LELG_00412 I
LEMA_P019380.1 Leptosphaeria maculans LEMA_P019380.1 I
M437DRAFT_81025 Aureobasidium melanogenum M437DRAFT_81025 I
M438DRAFT_10900 Aureobasidium pullulans M438DRAFT_10900 I
MAC_03141 Metarhizium acridum MAC_03141 I
MAJ_01335 Metarhizium majus MAJ_01335 I
MAM_06988 Metarhizium album MAM_06988 I
MANI_006610 Metarhizium anisopliae MANI_006610 I
MAPG_08028 Magnaporthe poae MAPG_08028 I
MBM_03132 Marssonina brunnea MBM_03132 I
MBR_01353 Metarhizium brunneum MBR_01353 I
MCYG_01946 Microsporum canis MCYG_01946 I
MCYG_01946 Arthroderma otae MCYG_01946 I
MGU_02028 Metarhizium guizhouense MGU_02028 I
MGYG_04125 Microsporum gypseum MGYG_04125 I
ML23712a Mnemiopsis leidyi ML23712a I
MPH_06970 Macrophomina phaseolina MPH_06970 I
MYCFIDRAFT_115603 Pseudocercospora fijiensis MYCFIDRAFT_115603 I
Mycgr3G110431 Zymoseptoria tritici Mycgr3G110431 I
MYCTH_2305050 Myceliophthora thermophila MYCTH_2305050 I
NCU06173 Neurospora crassa NCU06173 D
NechaG104145 Fusarium solani NechaG104145 I
NEUTE1DRAFT_81248 Neurospora tetrasperma NEUTE1DRAFT_81248 I
NFIA_037450 Neosartorya fischeri CADNFIAG00003777 I
OIDMADRAFT_135267 Oidiodendron maius OIDMADRAFT_135267 I
PAAG_07388 Paracoccidioides sp lutzii PAAG_07388 I
Pc20g00650 Penicillium chrysogenum Pc20g00650 I
PCH_Pc20g00650 Penicillium rubens PCH_Pc20g00650 I
PDE_02308 Penicillium oxalicum PDE_02308 I
PDIP_22270 Penicillium digitatum PDIP_22270 I
PGUG_03609 Candida guilliermondii PGUG_03609 I
PGUG_03609 Meyerozyma guilliermondii PGUG_03609 I
PITC_087800 Penicillium italicum PITC_087800 I
PMAA_086430 Talaromyces marneffei PMAA_086430 I
PMAA_086430 Penicillium marneffei PMAA_086430 I
PNEG_00623 Pneumocystis murina PNEG_00623 I
PODANS_7_8160 Podospora anserina PODANS_7_8160 I
PPAI010442 Phlebotomus papatasi PPAI010442 I
PredSwiss_ASS2010_3214.2 Pneumocystis carinii PredSwiss_ASS2010_3214.2 I
PredSwiss_CON281.1 Pneumocystis carinii PredSwiss_CON281.1 I
PredSwiss_EST794.1 Pneumocystis carinii PredSwiss_EST794.1 I
PTRG_01176 Pyrenophora triticirepentis PTRG_01176 I
PTT_16256 Pyrenophora teres PTT_16256 I
PV04_03696 Capronia semiimmersa PV04_03696 I
PV05_05591 Exophiala xenobiotica PV05_05591 I
PV06_00250 Exophiala oligosperma PV06_00250 I
PV07_06572 Cladophialophora immunda PV07_06572 I
PV08_04098 Exophiala spinifera PV08_04098 I
PV09_00091 Verruconis gallopava PV09_00091 I
PV11_01234 Exophiala sideris PV11_01234 I
PVAR5_4466 Byssochlamys spectabilis PVAR5_4466 I
S40285_00309 Stachybotrys chlorohalonata S40285_00309 I
S40288_09653 Stachybotrys chartarum S40288_09653 I
SBOR_6605 Sclerotinia borealis SBOR_6605 I
sep1 Schizosaccharomyces pombe SPBC4C3.12 I
SEPMUDRAFT_149889 Sphaerulina musiva SEPMUDRAFT_149889 I
SETTUDRAFT_127754 Setosphaeria turcica SETTUDRAFT_127754 I
SMAC_05348 Sordaria macrospora SMAC_05348 I
SNOG_09317 Stagonospora nodorum SNOG_09317 I
SNOG_09317 Phaeosphaeria nodorum SNOG_09317 I
SOCG_00186 Schizosaccharomyces octosporus SOCG_00186 I
SPAPADRAFT_68220 Spathaspora passalidarum SPAPADRAFT_68220 N
SPOG_02771 Schizosaccharomyces cryophilus SPOG_02771 I
SS1G_00580 Sclerotinia sclerotiorum SS1G_00580 I
TEQG_03180 Trichophyton equinum TEQG_03180 I
TESG_00453 Trichophyton tonsurans TESG_00453 I
THITE_2118774 Thielavia terrestris THITE_2118774 I
TRIATDRAFT_82022 Trichoderma atroviride TRIATDRAFT_82022 I
TRIREDRAFT_21211 Trichoderma reesei TRIREDRAFT_21211 I
TRIVIDRAFT_30889 Trichoderma virens TRIVIDRAFT_30889 I
TRV_07921 Trichophyton verrucosum TRV_07921 I
TSTA_121740 Talaromyces stipitatus TSTA_121740 I
U727_00430251281 Penicillium solitum U727_00430251281 I
UCREL1_4498 Eutypa lata UCREL1_4498 I
UCRNP2_7609 Neofusicoccum parvum UCRNP2_7609 I
UCRPA7_1691 Togninia minima UCRPA7_1691 I
UREG_04032 Uncinocarpus reesii UREG_04032 I
UV8b_1716 Ustilaginoidea virens UV8b_1716 I
V499_00193 Pseudogymnoascus pannorum V499_00193 I
VDAG_05936 Verticillium dahliae VDAG_05936 I
VDBG_06876 Verticillium albo atrum VDBG_06876 I
VDBG_06876 Verticillium alfalfae VDBG_06876 I
VHEMI05130 Torrubiella hemipterigena VHEMI05130 I
W97_05244 Coniosporium apollinis W97_05244 I
X797_001845 Metarhizium robertsii X797_001845 I
YALI0_C01463g Yarrowia lipolytica YALI0_C01463g I
Z517_10228 Fonsecaea pedrosoi Z517_10228 I
Z518_01443 Rhinocladiella mackenziei Z518_01443 I
Z519_00136 Cladophialophora bantiana Z519_00136 I