L889_g20608 (Steinernema feltiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L889_g20608 T234627_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.760 0.873
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.760 0.873
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.760 0.873
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.760 0.873
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.760 0.836
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.760 0.836
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.760 0.836
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.760 0.836
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.760 0.836
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.759 0.855
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.759 0.855
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.759 0.855
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.759 0.855
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.759 0.855
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.759 0.855
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.759 0.836
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.753 0.836
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g20608.t1 Homeodomain 17 72

Links

Other Homeodomain family TFs
Other Steinernema feltiae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_078350 Acremonium chrysogenum ACRE_078350 N
BBA_03307 Beauveria bassiana BBA_03307 N
CFIO01_08628 Colletotrichum fioriniae CFIO01_08628 N
CGGC5_8904 Colletotrichum gloeosporioides CGGC5_8904 N
CMQ_1388 Grosmannia clavigera CMQ_1388 N
CSUB01_05917 Colletotrichum sublineola CSUB01_05917 N
estExt_Genewise1.C_sca_17_chr8_1_00336 Nectria haematococca estExt_Genewise1.C_sca_17_chr8_1_00336 N
FFUJ_08949 Fusarium fujikuroi FFUJ_08949 N
FGRRES_09014 Fusarium graminearum FGRRES_09014 N
FOXG_09079 Fusarium oxysporum FOXG_09079 N
FVEG_06682 Fusarium verticillioides FVEG_06682 N
FVEG_11090 Fusarium verticillioides FVEG_11090 N
GGTG_12271 Gaeumannomyces graminis GGTG_12271 N
GLRG_04837 Colletotrichum graminicola GLRG_04837 N
MAC_07316 Metarhizium acridum MAC_07316 N
MAJ_09423 Metarhizium majus MAJ_09423 N
MAM_07146 Metarhizium album MAM_07146 N
MANI_005235 Metarhizium anisopliae MANI_005235 N
MAPG_09611 Magnaporthe poae MAPG_09611 N
MBR_09867 Metarhizium brunneum MBR_09867 N
MGU_07052 Metarhizium guizhouense MGU_07052 N
NechaG62595 Fusarium solani NechaG62595 N
PFICI_07869 Pestalotiopsis fici PFICI_07869 N
PODANS_2_6520 Podospora anserina PODANS_2_6520 N
S40285_02230 Stachybotrys chlorohalonata S40285_02230 N
S40288_03755 Stachybotrys chartarum S40288_03755 N
SAPIO_CDS8323 Scedosporium apiospermum SAPIO_CDS8323 N
TRIATDRAFT_322087 Trichoderma atroviride TRIATDRAFT_322087 N
UCRPA7_5783 Togninia minima UCRPA7_5783 N
VDAG_05079 Verticillium dahliae VDAG_05079 N
VDBG_06541 Verticillium alfalfae VDBG_06541 N
VDBG_06541 Verticillium albo atrum VDBG_06541 N
X797_009746 Metarhizium robertsii X797_009746 N