SMTD_0002282001 (Schistosoma mattheei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMTD_0002282001 T236173_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.709 0.326
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.709 0.326
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.709 0.326
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.709 0.326
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.709 0.326
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.709 0.326
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.709 0.326
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.709 0.326
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.709 0.326
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.679 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.679 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.679 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMTD_0002282001-mRNA-1 Homeodomain 21 66

Links

Other Homeodomain family TFs
Other Schistosoma mattheei TFs

1222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GA20899 Drosophila pseudoobscura FBgn0080889 N 0.000
GF18477 Drosophila ananassae FBgn0095495 N 0.000
GG16885 Drosophila erecta FBgn0109113 N 0.000
GL22327 Drosophila persimilis FBgn0159919 N 0.000
GM23815 Drosophila sechellia FBgn0178680 N 0.000
MBD-like Drosophila melanogaster FBgn0027950 N 0.000
MBD-like Drosophila yakuba FBgn0068128 N 0.000