TCNE_0001337901 (Toxocara canis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 TCNE_0001337901 T236826_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mirr
M06514_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0233.1 		0.842 0.877
mirr
M06305_2.00 		Drosophila melanogaster
NDNWWACA
TGTWWNHN		 B1H
Zhu et al.(2011)
Mirr_Cell_FBgn0014343 		0.842 0.877
mirr
M06306_2.00 		Drosophila melanogaster
DDWACA
TGTWHH		 B1H
Zhu et al.(2011)
Mirr_SOLEXA_FBgn0014343 		0.842 0.877
SNAPOd2T00005194001
M02229_2.00 		Oikopleura dioica
NNTACATGTDN
NHACATGTANN		 PBM
Weirauch et al.(2014)
pTH5976 		0.842 0.807
Irx3
M00453_2.00 		Mus musculus
NNDACAHNNN
NNNDTGTHNN		 PBM
Berger et al.(2008)
Irx3_0920 		0.811 0.860
Irx3
M00454_2.00 		Mus musculus
NNDACWHN
NDWGTHNN		 PBM
Berger et al.(2008)
Irx3_2226 		0.811 0.860
Irx3
M03266_2.00 		Mus musculus
WWTKTCATGTWR
YWACATGAMAWW		 SELEX
Jolma et al.(2013)
Irx3_1 		0.811 0.860
IRX1
M05283_2.00 		Homo sapiens
DDCRHNNNNNNNNDYGHH
DDCRHNNNNNNNNDYGHH		 SELEX
Yin et al.(2017)
IRX1_eDBD_HT-SELEX 		0.811 0.860
IRX3
M05319_2.00 		Homo sapiens
DACAHGNWWWWNCDTGTH
DACAHGNWWWWNCDTGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_HT-SELEX 		0.811 0.860
IRX1
M05284_2.00 		Homo sapiens
NNCRHNNNNNNNNDYVHN
NDBRHNNNNNNNNDYGNN		 SELEX
Yin et al.(2017)
IRX1_eDBD_Methyl-HT-SELEX 		0.811 0.860
IRX3
M05320_2.00 		Homo sapiens
DACRYRHNWWNDYKCGTW
WACGMRHNWWNDYRYGTH		 SELEX
Yin et al.(2017)
IRX3_eDBD_Methyl-HT-SELEX 		0.811 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TCNE_0001337901-mRNA-1 Homeodomain 128 186

Links

Other Homeodomain family TFs
Other Toxocara canis TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action